Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8c09
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 463 GIFKIASRFEGSRRIVC*INC*T 395
           G+FKIA  F+G     C ++C T
Sbjct: 89  GVFKIAPIFKGIGYATCVLSCWT 111


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 463 GIFKIASRFEGSRRIVC*INC*T 395
           G+FKIA  F+G     C ++C T
Sbjct: 142 GVFKIAPIFKGIGYATCVLSCWT 164


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -1

Query: 531 IH*APYKIVLDVHTSKHLHPTPLASS 454
           IH  P+       T  H H TPLA S
Sbjct: 426 IHATPHHHHSHAATPHHQHSTPLAHS 451


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 558 KPETCTQMTATEQWI 602
           KP T  + T TE WI
Sbjct: 409 KPSTMERQTQTEVWI 423


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 299 SVGHFFWWNGEKILLFA*TGSNVNKP 222
           SVG +F+ NG + +  +   SN+  P
Sbjct: 373 SVGRYFYPNGTEKMTLSVNESNITWP 398


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,553
Number of Sequences: 438
Number of extensions: 4716
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)