Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8c08
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)                   30   1.6  
SB_24309| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_39931| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)                 29   5.0  
SB_6911| Best HMM Match : Ank (HMM E-Value=0)                          28   8.7  

>SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)
          Length = 649

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 409 LVSVVTT-FHRVGENEWLLPVTGIQEASRLSGHIKVPNGVR 528
           LVS+  T F  V  NE  LP +G+    R S H+ VP+ +R
Sbjct: 131 LVSLSQTHFGNVSTNEVTLPQSGVTAFRRASAHVPVPDCLR 171


>SB_24309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/90 (20%), Positives = 42/90 (46%)
 Frame = +1

Query: 424 TTFHRVGENEWLLPVTGIQEASRLSGHIKVPNGVRVEKLRPNMSVYGTVQLPYDKIKRHA 603
           +T  R G  +W +  +    + +++   +  +    + ++  +      ++  DK+KR+ 
Sbjct: 66  STIARQGHKKWRVSGSPRHASRKITQGSRASHATLTDSIKEPLG--RDFEVDEDKVKRYT 123

Query: 604 LEQENKTPNALESCVLFYKDSEIRITYNRG 693
            E E +T   LE C++   D E   T+++G
Sbjct: 124 REDEQQTVERLERCLVKRCDDE---TFSKG 150


>SB_39931| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
          Length = 1023

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -3

Query: 281 SSFNGSKLPSSLKTLIIVFNTSCVKIIELTTPGNWWY 171
           S+ + S  P+++ T +   +T  V ++E   PG+W++
Sbjct: 25  STTSSSTTPNAVPTSVTTVDTILVNLLEARKPGSWFF 61


>SB_6911| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1961

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
 Frame = +1

Query: 34  DVMELYNIKYAIDPTNKIVIEQVDNVDAFVHILEPGQ--EVFDETLSRYHQFPGVVSSII 207
           D + L  +++ +DP +  +   VD +D    ILE G+  E+ +       QFP  V  ++
Sbjct: 478 DQVVLSPLRHILDPPSNQMFLVVDALDEC--ILETGRKNEIVELLSKTLDQFPSWVKVLL 535

Query: 208 FTQLVLNTIISVLSEDGSLLPLKLEN 285
            +Q V + +    S   SL+ ++ +N
Sbjct: 536 TSQKVPSILTEFSSPHVSLVEIEQDN 561


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,729,316
Number of Sequences: 59808
Number of extensions: 510822
Number of successful extensions: 1516
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1516
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)