Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8c07
         (731 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.48 
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    22   5.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -3

Query: 402 TCVCNVWRITCRRNCAPKRCCSSLCWENSKICRPA 298
           TC C   + TC R C    C      + S   RPA
Sbjct: 875 TCKCENGKPTCWRECDKATCEKLFRMKKSSALRPA 909



 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -3

Query: 414 CRTKTCVCNVWRITCRRNCAPKRCCSS 334
           C   TC      I C+R    K+CC +
Sbjct: 774 CTVCTCDAKYLEIKCKRIYNEKQCCKN 800


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 567 KWKPLDFLFEYNTLHKQQLVEHI 635
           K K +DFL   N++HK Q   H+
Sbjct: 91  KEKAVDFLTILNSMHKYQPRFHL 113


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,510
Number of Sequences: 336
Number of extensions: 3638
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)