Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8c07
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)                   31   0.73 
SB_25295| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.73 
SB_20423| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8)             30   2.2  
SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018)                     30   2.2  
SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)                      30   2.2  
SB_31555| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   3.9  
SB_28382| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_2355| Best HMM Match : Carn_acyltransf (HMM E-Value=0)              29   3.9  
SB_26982| Best HMM Match : 7tm_1 (HMM E-Value=9.94922e-44)             29   3.9  
SB_33902| Best HMM Match : Metallothionein (HMM E-Value=0.71)          29   5.1  
SB_39667| Best HMM Match : rve (HMM E-Value=9e-32)                     29   5.1  
SB_39751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_18135| Best HMM Match : Cytochrom_B561 (HMM E-Value=0.5)            28   6.8  
SB_34818| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      28   9.0  
SB_7684| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  
SB_21869| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)
          Length = 416

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
 Frame = -3

Query: 633 CVPRVVVCEACCIRR----ENRAVSICR 562
           CV  V VC+ CC+R      NRAVS+C+
Sbjct: 371 CVRTVSVCQPCCVRTICPYVNRAVSVCQ 398


>SB_25295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 327 NIMMNNNVLVHNFYDKLYAKHCKRMFLYGNVDQEKHINRAIQLV-YDKQNDV 479
           N+  N N +  N   K  A H  + FLY NV Q K+ N  +Q +   KQ+D+
Sbjct: 43  NLPDNVNSITLNLAGKEKANHGAKRFLYENVPQLKYKNPHVQFMRTKKQSDI 94


>SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1104

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -3

Query: 498  TRLEQTKRRFVCRKLVGLHD*CAFLDPRCRTKTCVCNVWRITCRRNCAPKRCCSSLC 328
            T+++Q KR    RK   +    A L+  C T  C+ ++WRI CRR       CS  C
Sbjct: 1050 TQIDQIKRCESTRKKTMIIQ-VAKLEMSCFTLDCL-HIWRIICRRKKRSIHRCSWFC 1104


>SB_20423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -2

Query: 388 CLAYNLS*KLCTKTLLFIIMLGKLKNLPSSIKVPLILLFASISSVSLNCL 239
           C+A+  S  L + T+LFI+ L     L +SI +P+ L F   S  S  CL
Sbjct: 42  CIAFYRSSNLQSLTVLFILSLAVTDILVASISMPIWLYF-QFSHSSFTCL 90


>SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8)
          Length = 213

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
 Frame = +3

Query: 177 NEQLNCVMHKCVPVIFGTRLDKQFRETDD----IDANNNINGTFMLDGRFLSFPNIMMNN 344
           N       H  + +IF   +D      DD     D NNNIN   +++    +  N   NN
Sbjct: 93  NHNTKSSYHNDIIIIFNNNIDNNINNNDDDNNKSDNNNNINNNIIINNNNNNDENNNNNN 152

Query: 345 N 347
           N
Sbjct: 153 N 153


>SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018)
          Length = 786

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 303 DGRFLSFPNIMMNNNVLVHNFYDKLYAKHCKRMFLYGNVDQ--EKHINRA 446
           D +  S+PNIM+ N +L   FY ++Y  +C   F    +D+  EK IN A
Sbjct: 510 DHKLNSWPNIMVVNLMLTTIFYKEIY--YCVIPFTVDEIDKDNEKVINAA 557


>SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 879

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -3

Query: 399 CVCNVWRITCRRNCAPKRCCSSLC 328
           C C    ITC R C P R   SLC
Sbjct: 186 CSCRCVPITCSRRCVPHRVFISLC 209


>SB_31555| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1063

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/70 (31%), Positives = 35/70 (50%)
 Frame = +3

Query: 72  NKYKLKYTFDCATNNNERILFGAIQERKSYLCCALNEQLNCVMHKCVPVIFGTRLDKQFR 251
           + YK  Y +D ++NNN  I  G   +   Y C +    +    H CV +IF  R  +Q R
Sbjct: 725 SNYKYSYDYDKSSNNNTCIRTGFFSK---YTCIS---YIRLHTH-CVVIIFVMR--RQMR 775

Query: 252 ETDDIDANNN 281
           + ++  AN+N
Sbjct: 776 KRENALANSN 785


>SB_28382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = +3

Query: 528 LNSVLETYLANSGKWKPLDFLFEYNTLHKQQLVEHIKIIMNHDINYSIDSLANKIVYKHA 707
           L +   T+    G  K LD       L +  L   I ++M H  NY+ D LA  +V    
Sbjct: 38  LFTTTNTFKQLKGGRKALDRSIHGGELFETLLRTPIMVVMTHMTNYANDRLAQYLVTSLV 97

Query: 708 YLIE 719
           Y +E
Sbjct: 98  YFME 101


>SB_2355| Best HMM Match : Carn_acyltransf (HMM E-Value=0)
          Length = 1559

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 498 TRLEQTKRRFVCRKLVGLHD*CA 430
           TR  QT++RF  + L+ +HD CA
Sbjct: 554 TRFSQTRQRFYIQTLLNIHDHCA 576


>SB_26982| Best HMM Match : 7tm_1 (HMM E-Value=9.94922e-44)
          Length = 382

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 132 FGAIQERKSYLCCALNEQLNCVMHKCV-PVIFGTRLDKQFR 251
           FG+ +++++ + C     +  V H C+ P+I+GT L +QFR
Sbjct: 248 FGSEKQKQTAVVCIKFGVITSVFHSCMNPLIYGT-LTRQFR 287


>SB_33902| Best HMM Match : Metallothionein (HMM E-Value=0.71)
          Length = 361

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -3

Query: 423 DPRCRTKTCVCNVWRITCRRNC---APKRCCSSLC-WENSKI 310
           D RC+T+ C C+  R+ C   C   A   C S L   EN+++
Sbjct: 316 DKRCKTQRCSCSRARLPCTLFCKCNASNECFSELTNGENTRV 357


>SB_39667| Best HMM Match : rve (HMM E-Value=9e-32)
          Length = 1845

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +3

Query: 417  VDQEK--HINRAIQLVYDKQNDVLFARDVYASDYV 515
            VD +K  +I+R  +LVY +++D++F  + +  DYV
Sbjct: 1321 VDGKKVNNISRFQELVYAEESDIVFVTETWPKDYV 1355


>SB_39751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 327 NIMMNNNVLVHNFYDKLYAKHCKRMFLYGNVDQEKHINRAI 449
           NIM NNN  ++N   +  + +    F Y N+++  +IN  I
Sbjct: 28  NIMTNNNNSINNKNSEKSSNNINNDFNYKNINKSNNINNII 68


>SB_18135| Best HMM Match : Cytochrom_B561 (HMM E-Value=0.5)
          Length = 1595

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -3

Query: 183  VH*ERNTNKTCVL--E*PQKVYVHCCL*HNQKYILICIYFQFYRTT 52
            VH  R     CV+  + P   YV+ C    Q Y+++ ++   Y TT
Sbjct: 1539 VHISRYVTTLCVMIRDNPMSWYVYTCQGTRQPYVMVRVHMSRYATT 1584


>SB_34818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 444

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 396 RMFLYGNVDQEKHINRAIQLVYDKQNDVLFARDVYASDYVVTEDLNSVLETYLANSGK-W 572
           R+F YG    E +  +A +L   ++    F + +Y S       +N  +ETY   SG  W
Sbjct: 174 RIFSYGTDINELYQTKADRLKVYRRRQQEFWQRLYGSRLATVASINVSVETYQKASGDCW 233

Query: 573 KP 578
            P
Sbjct: 234 LP 235


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
 Frame = -3

Query: 435 CAFLDPRCRTKTCVCNVWRITCRRNCAPKR--CCSS--LCWENSKIC 307
           C  +   CR   C C V   +CR  C   R  CCS   +C+    +C
Sbjct: 139 CRVVFCSCRVACCSCRVVCYSCRVACCSCRVACCSCRVVCYSCRVVC 185


>SB_7684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -1

Query: 572 PFAAVGQIRFQHRI*IFRHHVIASVHVSSKQNVV--LFVVN*LDCTINVLFLIH 417
           PF A+ QIR + +I + R H I S + SS   ++  +  VN L   +  +F+++
Sbjct: 30  PFTAMDQIRLEAKIKVGRFHPIPSHYSSSLSQLINSMLQVN-LHMAVESMFILN 82


>SB_21869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1123

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/51 (21%), Positives = 27/51 (52%)
 Frame = +3

Query: 195 VMHKCVPVIFGTRLDKQFRETDDIDANNNINGTFMLDGRFLSFPNIMMNNN 347
           + +  +  + G+R+   F E +DI  N++++    L+   L   + ++N+N
Sbjct: 382 IENTAIDAVTGSRMQVSFPEQEDIPLNDSLDDRTSLNSDMLCLSDDLINDN 432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,207,427
Number of Sequences: 59808
Number of extensions: 466100
Number of successful extensions: 1397
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)