Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8c06
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0020 + 13837257-13837281,13837364-13837550,13837655-138377...   186   2e-47
09_06_0344 - 22419152-22419250,22419460-22419554,22419952-224201...    68   7e-12
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973...    66   3e-11
02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270...    51   1e-06
02_02_0053 + 6396442-6396921,6397027-6397122,6397232-6397345,639...    33   0.31 
01_06_1579 + 38402868-38402894,38403394-38403582,38403817-384039...    32   0.54 
03_02_0896 - 12233706-12233801,12234005-12234181,12234741-122348...    29   2.9  
01_01_0926 + 7324145-7324561,7324773-7324778,7325255-7325311,732...    29   2.9  
07_01_1073 + 9566727-9566963,9566992-9567180                           28   8.8  
02_05_0095 + 25778461-25778596,25778940-25779069,25780459-25781146     28   8.8  

>09_04_0020 +
           13837257-13837281,13837364-13837550,13837655-13837727,
           13837769-13837804,13838161-13838281,13838399-13838472,
           13838594-13838730,13839262-13839325,13839693-13839758,
           13840061-13840130,13840206-13840310,13840840-13840981,
           13841343-13841439,13841939-13842460
          Length = 572

 Score =  186 bits (452), Expect = 2e-47
 Identities = 87/172 (50%), Positives = 120/172 (69%), Gaps = 16/172 (9%)
 Frame = +2

Query: 269 IKITPLGAGQDVGRSCILLTMGG-KNIMLDCGMHMGYNDERRFPDFSYIVPEGPI--TSQ 439
           I+   LGAGQ+VG+SC+++T GG K +M DCGMHMG+ D RR+PDF  ++ +G    T+ 
Sbjct: 3   IECLVLGAGQEVGKSCVVVTFGGGKRVMFDCGMHMGHRDSRRYPDFDRLLADGAADYTAA 62

Query: 440 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTH-------------PTKAIAPILLEDM 580
           I CV+I+HFHLDH GALPY +E+ GY GP+YMT+             PTKA+AP++LED 
Sbjct: 63  ISCVVITHFHLDHIGALPYFTEVCGYHGPVYMTYYDCAALVYPFQQYPTKALAPLMLEDY 122

Query: 581 RKVAVERKGESNFFTSQMIKDCMKKVTAVTLHQSVMVDNELEIKAYYAGHVL 736
           RKV V+ +GE   ++ + I  CM+KV  + L Q++ VD +L I+AYYAGHVL
Sbjct: 123 RKVMVDHRGEEEQYSYEDILRCMRKVIPLDLKQTIQVDKDLSIRAYYAGHVL 174


>09_06_0344 -
           22419152-22419250,22419460-22419554,22419952-22420108,
           22420825-22420869,22421080-22421211,22421496-22421594,
           22421690-22421785,22421968-22422149,22422242-22422494,
           22422867-22422974,22423037-22423094,22423462-22423613,
           22423698-22423792,22424172-22424287,22424369-22424495,
           22424565-22424661,22424745-22424913,22425879-22426027
          Length = 742

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
 Frame = +2

Query: 269 IKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDC 448
           +++TPL      G  C LL + G   +LDCG    + D     D S++ P   +   ID 
Sbjct: 5   VQVTPLSGAYGEGPLCYLLAVDGFRFLLDCG----WTD---LCDPSHLQPLAKVAPTIDA 57

Query: 449 VIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 628
           V++SH    H GALPY  + +G + P+Y T P   +  + L D   ++  +  + + FT 
Sbjct: 58  VLLSHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTLYDY-FISRRQVSDFDLFTL 116

Query: 629 QMIKDCMKKVTAVTLHQSVMVDNELE---IKAYYAGHVL 736
             I    + V  +   Q+ +++++ E   I  + AGH L
Sbjct: 117 DDIDAAFQNVVRLKYSQNHLLNDKGEGIVIAPHVAGHDL 155


>03_06_0716 -
           35695158-35696795,35697075-35697288,35697290-35697372,
           35697695-35697865
          Length = 701

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 3/157 (1%)
 Frame = +2

Query: 275 ITPLGAGQDVGRSCILLTMGGKNIMLD---CGMHMGYNDERRFPDFSYIVPEGPITSQID 445
           ITPLGAG +VGRSC+ ++  G+ ++L    C +      E   P  S  +    +  +  
Sbjct: 33  ITPLGAGNEVGRSCVYMSFKGRTVLLSLGPCCLSSLLLGEGNVPPSSVFL----LRHKCS 88

Query: 446 CVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFT 625
            + +  F +     L +      + G ++MTH TKAI  +LL D  KV+ +   E   F 
Sbjct: 89  AIALIPFSILK---LLWFYLQTTFKGRVFMTHATKAIYRLLLSDYVKVS-KVSVEDMLFD 144

Query: 626 SQMIKDCMKKVTAVTLHQSVMVDNELEIKAYYAGHVL 736
            Q I   M K+  +  HQ++ V N +    Y AGHVL
Sbjct: 145 EQDILRSMDKIEVIDFHQTLEV-NGIRFWCYTAGHVL 180


>02_04_0130 +
           20025414-20025531,20026357-20026585,20026909-20027032,
           20027441-20027497,20027613-20027804,20027882-20027959,
           20028437-20028619,20028715-20028795,20029196-20029228,
           20029448-20029513,20029591-20029683,20030106-20030231,
           20030395-20030508,20030973-20031068,20031159-20031256,
           20031416-20031831,20032025-20032473,20032810-20032905
          Length = 882

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
 Frame = +2

Query: 263 PDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDE----RRFPDFSYIVPEGPI 430
           P +++ P+G   ++G +C+L+    + I++D G+     DE    +  PD ++I      
Sbjct: 79  PPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDFDEFGVQKIIPDTTFIKKW--- 135

Query: 431 TSQIDCVIISHFHLDHCGALPYMSEMIGYTGPIY 532
           + +I+ VII+H H DH GALP++   +  + PI+
Sbjct: 136 SHKIEAVIITHGHEDHIGALPWVIPALDSSTPIF 169


>02_02_0053 +
           6396442-6396921,6397027-6397122,6397232-6397345,
           6397723-6397791,6397891-6397965,6398262-6398336
          Length = 302

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 27/96 (28%), Positives = 40/96 (41%)
 Frame = +2

Query: 449 VIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 628
           + ISH HLDH G LP    M   T  +Y   P     P  L D     VER  E +    
Sbjct: 72  LFISHAHLDHIGGLP----MYVATRGLYRQRPPTIFIPACLRD----PVERLFELHRSMD 123

Query: 629 QMIKDCMKKVTAVTLHQSVMVDNELEIKAYYAGHVL 736
           Q   +    +  + + Q   +  +L++KA+   H +
Sbjct: 124 Q--SELSHNLVPLEIGQEHELRRDLKVKAFKTYHAI 157


>01_06_1579 +
           38402868-38402894,38403394-38403582,38403817-38403918,
           38404005-38405963,38406050-38406105,38406332-38406368
          Length = 789

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = +2

Query: 476 HCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKG--ESNFFTSQMIKDCM 649
           +CGA+P++  ++  T P    +    +  + L+D  K+A+      E   F  Q+     
Sbjct: 533 NCGAIPFLVSLLHSTDPSTQENAVTILLNLSLDDNNKIAIASAEAIEPLIFVLQVGNPEA 592

Query: 650 KKVTAVTLHQ-SVMVDNELEI 709
           K  +A TL   SV+ +N+++I
Sbjct: 593 KANSAATLFSLSVIEENKIKI 613


>03_02_0896 -
           12233706-12233801,12234005-12234181,12234741-12234854,
           12234928-12235006,12235372-12235533,12235957-12236079,
           12236139-12236218
          Length = 276

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 437 QIDCVIISHFHLDHCGALPYMSEMI 511
           +IDCV+ +H H DH G    M++ +
Sbjct: 57  RIDCVLTTHHHWDHAGGNEKMAQSV 81


>01_01_0926 +
           7324145-7324561,7324773-7324778,7325255-7325311,
           7325572-7325661,7325938-7325982,7326088-7326142,
           7326245-7326288,7326401-7326790,7327276-7327541,
           7328292-7328430,7328514-7328564,7329158-7329642,
           7329724-7330327,7330717-7331025
          Length = 985

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +2

Query: 320 LLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVIISHFHLDH 478
           L T GG  I+LDCG       +RRF     +         + C+ ISH H DH
Sbjct: 661 LFTQGG--ILLDCGEGTLGQLKRRFG----VSGADDAVKSLKCIWISHIHADH 707


>07_01_1073 + 9566727-9566963,9566992-9567180
          Length = 141

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 380 RCSPYAYHNLTLCFCHPWLARCSS 309
           RC+P  Y  +  C C PW  RC S
Sbjct: 113 RCAPVEYQ-MAGCRCAPWRHRCDS 135


>02_05_0095 + 25778461-25778596,25778940-25779069,25780459-25781146
          Length = 317

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 274 DYATRSGPGCWSELHLANHGWQKH 345
           DY  R G GCWS L  AN G Q++
Sbjct: 28  DYILRHGHGCWSALP-ANAGLQRN 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,838,768
Number of Sequences: 37544
Number of extensions: 423313
Number of successful extensions: 794
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)