Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8c06
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22166| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   6e-06
SB_957| Best HMM Match : Lactamase_B (HMM E-Value=0.38)                33   0.18 
SB_59526| Best HMM Match : Lactamase_B (HMM E-Value=7.9e-12)           33   0.24 
SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_5980| Best HMM Match : Stig1 (HMM E-Value=1.4)                      28   6.8  
SB_40832| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_1625| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_22166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 577

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 3/159 (1%)
 Frame = +2

Query: 269 IKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDC 448
           IK+  L    D    C LL +     +LDCG    +N+     D   +        Q+D 
Sbjct: 5   IKLNVLSGAHDEAPLCYLLQVDEFRFLLDCG----WNETL---DMEIMESIKRHVQQVDA 57

Query: 449 VIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 628
           V++S   + H G LPY+    G   PIY T P   +  + + D  +   +   E + F+ 
Sbjct: 58  VLVSFPDIYHMGGLPYLVGKCGLHCPIYTTIPVYKMGQMFMYDWYQ-CHQNSEEFDVFSL 116

Query: 629 QMIKDCMKKVTAVTLHQSVMVDNE---LEIKAYYAGHVL 736
             +     K+  +   Q+V +  +   + I  Y AGH++
Sbjct: 117 DDVDAVFDKIIQLKYSQTVSLKGKGHGITITPYAAGHMI 155


>SB_957| Best HMM Match : Lactamase_B (HMM E-Value=0.38)
          Length = 236

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
 Frame = +2

Query: 302 VGRSCILLTMGGKNIMLD------CGMHMGYNDERRFPDFSYIVPEGPITSQIDCVIISH 463
           +G +  L+ M G NI+ D      CGM+      +RF      + + P   QID VIISH
Sbjct: 50  IGHATCLVQMNGLNILTDPVFNDYCGMNRLVG-VKRFRPVPCTIDQLP---QIDAVIISH 105

Query: 464 FHLDH 478
            H DH
Sbjct: 106 NHYDH 110


>SB_59526| Best HMM Match : Lactamase_B (HMM E-Value=7.9e-12)
          Length = 282

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 25/74 (33%), Positives = 33/74 (44%)
 Frame = +2

Query: 305 GRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVIISHFHLDHCG 484
           G SC++L   G   M DCG       E      +  V +   +S+I  + ISH H DH  
Sbjct: 18  GASCVILWYNGSCWMFDCG-------EGTQTQLTKSVIK---SSKITKIFISHLHGDHVF 67

Query: 485 ALPYMSEMIGYTGP 526
            LP +   IG T P
Sbjct: 68  GLPGLLCTIGLTAP 81


>SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 349  HYVFATHG*QDAAPTNILARSEWRNLNIRHY-KFYHIQGSL*KYTFQDYEY*RHEMIRQ 176
            H + A H  QD    + L ++ +R    RH  + YH Q ++ + T +   Y RH ++ Q
Sbjct: 1344 HAMHARHAMQDTLQ-DTLCKTRYRTRYARHATRHYHAQHAIVQGTLRTERYVRHALVLQ 1401


>SB_5980| Best HMM Match : Stig1 (HMM E-Value=1.4)
          Length = 712

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 592 CDFPHILEKDWCYGFSRVCHVNRAGITNHFGHIGQCTA 479
           C   H+ +K+ C  + + C  N  G  NHF     CTA
Sbjct: 247 CLKKHLKKKELCPAWMKQC--NDCGTANHFSGSSMCTA 282


>SB_40832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1496

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 269 IKITPLGAGQDVGRSCILLTMGGKNIMLDC 358
           I   P  A QD+G+S +LLT  G +++L C
Sbjct: 400 IATQPESANQDIGKSIVLLT--GSSLVLHC 427


>SB_1625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 601 ALHCDFPHILEKDWCYGFSRVCHVNRAGITNHF 503
           A++C   H   K+ C  F + CH    G +NHF
Sbjct: 76  AIYCGGMHEKAKEKCPAFGKTCH--NCGKSNHF 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,465,451
Number of Sequences: 59808
Number of extensions: 504647
Number of successful extensions: 945
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)