Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8c06
(736 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and polyadenyl... 290 3e-78
AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and polyadenyl... 290 3e-78
CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein. 287 3e-77
AL139287-11|CAI23181.1| 283|Homo sapiens cleavage and polyadeny... 274 2e-73
AL139287-12|CAI23182.1| 308|Homo sapiens cleavage and polyadeny... 260 3e-69
AL139287-10|CAI23180.1| 379|Homo sapiens cleavage and polyadeny... 260 3e-69
AL139287-5|CAI23174.1| 598|Homo sapiens cleavage and polyadenyl... 260 4e-69
AK023356-1|BAB14541.1| 278|Homo sapiens protein ( Homo sapiens ... 260 4e-69
BC020199-1|AAH20199.1| 389|Homo sapiens CPSF3L protein protein. 240 3e-63
BC008041-1|AAH08041.1| 389|Homo sapiens CPSF3L protein protein. 240 3e-63
AL139287-9|CAI23178.1| 401|Homo sapiens cleavage and polyadenyl... 240 3e-63
AK223487-1|BAD97207.1| 684|Homo sapiens cleavage and polyadenyl... 126 1e-28
BC030988-1|AAH30988.1| 554|Homo sapiens CPSF3 protein protein. 124 3e-28
BC020211-1|AAH20211.1| 684|Homo sapiens cleavage and polyadenyl... 124 3e-28
AF171877-1|AAF00224.1| 684|Homo sapiens cleavage and polyadenyl... 124 3e-28
AC080162-3|AAY14858.1| 684|Homo sapiens unknown protein. 124 3e-28
BC011654-1|AAH11654.1| 684|Homo sapiens cleavage and polyadenyl... 122 1e-27
AL139287-7|CAI23176.1| 514|Homo sapiens cleavage and polyadenyl... 83 1e-15
AK021939-1|BAB13943.1| 499|Homo sapiens protein ( Homo sapiens ... 83 1e-15
BC000675-1|AAH00675.2| 473|Homo sapiens CPSF3L protein protein. 60 6e-09
BC070095-1|AAH70095.1| 782|Homo sapiens cleavage and polyadenyl... 48 3e-05
BC025267-1|AAH25267.1| 658|Homo sapiens integrator complex subu... 47 8e-05
AK001733-1|BAA91867.1| 658|Homo sapiens protein ( Homo sapiens ... 47 8e-05
AL139287-8|CAI23179.1| 523|Homo sapiens cleavage and polyadenyl... 36 0.20
>BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 600
Score = 290 bits (712), Expect = 3e-78
Identities = 126/159 (79%), Positives = 145/159 (91%)
Frame = +2
Query: 260 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 439
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 60
Query: 440 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 619
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 620 FTSQMIKDCMKKVTAVTLHQSVMVDNELEIKAYYAGHVL 736
FTSQMIKDCMKKV AV LHQ+V VD+ELEIKAYYAGHVL
Sbjct: 121 FTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVL 159
>AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 627
Score = 290 bits (712), Expect = 3e-78
Identities = 126/159 (79%), Positives = 145/159 (91%)
Frame = +2
Query: 260 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 439
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 28 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 87
Query: 440 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 619
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NF
Sbjct: 88 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 147
Query: 620 FTSQMIKDCMKKVTAVTLHQSVMVDNELEIKAYYAGHVL 736
FTSQMIKDCMKKV AV LHQ+V VD+ELEIKAYYAGHVL
Sbjct: 148 FTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVL 186
>CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein.
Length = 600
Score = 287 bits (704), Expect = 3e-77
Identities = 125/159 (78%), Positives = 144/159 (90%)
Frame = +2
Query: 260 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 439
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 60
Query: 440 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 619
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTH T+AI PILLED RK+AV++KGE+NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHSTQAICPILLEDYRKIAVDKKGEANF 120
Query: 620 FTSQMIKDCMKKVTAVTLHQSVMVDNELEIKAYYAGHVL 736
FTSQMIKDCMKKV AV LHQ+V VD+ELEIKAYYAGHVL
Sbjct: 121 FTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVL 159
>AL139287-11|CAI23181.1| 283|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 283
Score = 274 bits (673), Expect = 2e-73
Identities = 120/150 (80%), Positives = 136/150 (90%)
Frame = +2
Query: 287 GAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVIISHF 466
GAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T +DCVIISHF
Sbjct: 77 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 136
Query: 467 HLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQMIKDC 646
HLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NFFTSQMIKDC
Sbjct: 137 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 196
Query: 647 MKKVTAVTLHQSVMVDNELEIKAYYAGHVL 736
MKKV AV LHQ+V VD+ELEIKAYYAGHVL
Sbjct: 197 MKKVVAVHLHQTVQVDDELEIKAYYAGHVL 226
>AL139287-12|CAI23182.1| 308|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 308
Score = 260 bits (638), Expect = 3e-69
Identities = 112/144 (77%), Positives = 130/144 (90%)
Frame = +2
Query: 260 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 439
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 20 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 79
Query: 440 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 619
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NF
Sbjct: 80 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 139
Query: 620 FTSQMIKDCMKKVTAVTLHQSVMV 691
FTSQMIKDCMKKV AV LHQ+V V
Sbjct: 140 FTSQMIKDCMKKVVAVHLHQTVQV 163
>AL139287-10|CAI23180.1| 379|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 379
Score = 260 bits (638), Expect = 3e-69
Identities = 112/144 (77%), Positives = 130/144 (90%)
Frame = +2
Query: 260 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 439
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 8 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 67
Query: 440 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 619
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NF
Sbjct: 68 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 127
Query: 620 FTSQMIKDCMKKVTAVTLHQSVMV 691
FTSQMIKDCMKKV AV LHQ+V V
Sbjct: 128 FTSQMIKDCMKKVVAVHLHQTVQV 151
>AL139287-5|CAI23174.1| 598|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 598
Score = 260 bits (637), Expect = 4e-69
Identities = 111/144 (77%), Positives = 130/144 (90%)
Frame = +2
Query: 260 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 439
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 21 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 80
Query: 440 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 619
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NF
Sbjct: 81 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 140
Query: 620 FTSQMIKDCMKKVTAVTLHQSVMV 691
FTSQMIKDCMKKV AV LHQ+V +
Sbjct: 141 FTSQMIKDCMKKVVAVHLHQTVQI 164
>AK023356-1|BAB14541.1| 278|Homo sapiens protein ( Homo sapiens
cDNA FLJ13294 fis, clone OVARC1001232, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 278
Score = 260 bits (637), Expect = 4e-69
Identities = 111/144 (77%), Positives = 130/144 (90%)
Frame = +2
Query: 260 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 439
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 60
Query: 440 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 619
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 620 FTSQMIKDCMKKVTAVTLHQSVMV 691
FTSQMIKDCMKKV AV LHQ+V +
Sbjct: 121 FTSQMIKDCMKKVVAVHLHQTVQI 144
>BC020199-1|AAH20199.1| 389|Homo sapiens CPSF3L protein protein.
Length = 389
Score = 240 bits (588), Expect = 3e-63
Identities = 101/130 (77%), Positives = 119/130 (91%)
Frame = +2
Query: 260 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 439
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 60
Query: 440 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 619
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 620 FTSQMIKDCM 649
FTSQMIKDC+
Sbjct: 121 FTSQMIKDCI 130
>BC008041-1|AAH08041.1| 389|Homo sapiens CPSF3L protein protein.
Length = 389
Score = 240 bits (588), Expect = 3e-63
Identities = 101/130 (77%), Positives = 119/130 (91%)
Frame = +2
Query: 260 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 439
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 60
Query: 440 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 619
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 620 FTSQMIKDCM 649
FTSQMIKDC+
Sbjct: 121 FTSQMIKDCI 130
>AL139287-9|CAI23178.1| 401|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 401
Score = 240 bits (588), Expect = 3e-63
Identities = 101/130 (77%), Positives = 119/130 (91%)
Frame = +2
Query: 260 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 439
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 13 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 72
Query: 440 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 619
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NF
Sbjct: 73 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 132
Query: 620 FTSQMIKDCM 649
FTSQMIKDC+
Sbjct: 133 FTSQMIKDCI 142
>AK223487-1|BAD97207.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa variant
protein.
Length = 684
Score = 126 bits (303), Expect = 1e-28
Identities = 65/154 (42%), Positives = 90/154 (58%)
Frame = +2
Query: 275 ITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVI 454
I PLGAGQ+VGRSCI+L G+ IMLDCG+H G P I P ++ID ++
Sbjct: 14 IRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDP-----AEIDLLL 68
Query: 455 ISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQM 634
ISHFHLDHCGALP+ + + G +MTH TKAI LL D KV+ + +T +
Sbjct: 69 ISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYTETV 127
Query: 635 IKDCMKKVTAVTLHQSVMVDNELEIKAYYAGHVL 736
+++ M K+ + H+ V ++ Y+AGHVL
Sbjct: 128 LEESMDKIETINFHEVKEVAG-IKFWCYHAGHVL 160
>BC030988-1|AAH30988.1| 554|Homo sapiens CPSF3 protein protein.
Length = 554
Score = 124 bits (299), Expect = 3e-28
Identities = 65/154 (42%), Positives = 89/154 (57%)
Frame = +2
Query: 275 ITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVI 454
I PLGAGQ+VGRSCI+L G+ IMLDCG+H G P I P ++ID ++
Sbjct: 14 IRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDP-----AEIDLLL 68
Query: 455 ISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQM 634
ISHFHLDHCGALP+ + + G +MTH TKAI LL D KV+ + +T
Sbjct: 69 ISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYTETD 127
Query: 635 IKDCMKKVTAVTLHQSVMVDNELEIKAYYAGHVL 736
+++ M K+ + H+ V ++ Y+AGHVL
Sbjct: 128 LEESMDKIETINFHEVKEVAG-IKFWCYHAGHVL 160
>BC020211-1|AAH20211.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa protein.
Length = 684
Score = 124 bits (299), Expect = 3e-28
Identities = 65/154 (42%), Positives = 89/154 (57%)
Frame = +2
Query: 275 ITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVI 454
I PLGAGQ+VGRSCI+L G+ IMLDCG+H G P I P ++ID ++
Sbjct: 14 IRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDP-----AEIDLLL 68
Query: 455 ISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQM 634
ISHFHLDHCGALP+ + + G +MTH TKAI LL D KV+ + +T
Sbjct: 69 ISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYTETD 127
Query: 635 IKDCMKKVTAVTLHQSVMVDNELEIKAYYAGHVL 736
+++ M K+ + H+ V ++ Y+AGHVL
Sbjct: 128 LEESMDKIETINFHEVKEVAG-IKFWCYHAGHVL 160
>AF171877-1|AAF00224.1| 684|Homo sapiens cleavage and
polyadenylation specificity factor 73 kDa subunit
protein.
Length = 684
Score = 124 bits (299), Expect = 3e-28
Identities = 65/154 (42%), Positives = 89/154 (57%)
Frame = +2
Query: 275 ITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVI 454
I PLGAGQ+VGRSCI+L G+ IMLDCG+H G P I P ++ID ++
Sbjct: 14 IRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDP-----AEIDLLL 68
Query: 455 ISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQM 634
ISHFHLDHCGALP+ + + G +MTH TKAI LL D KV+ + +T
Sbjct: 69 ISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYTETD 127
Query: 635 IKDCMKKVTAVTLHQSVMVDNELEIKAYYAGHVL 736
+++ M K+ + H+ V ++ Y+AGHVL
Sbjct: 128 LEESMDKIETINFHEVKEVAG-IKFWCYHAGHVL 160
>AC080162-3|AAY14858.1| 684|Homo sapiens unknown protein.
Length = 684
Score = 124 bits (299), Expect = 3e-28
Identities = 65/154 (42%), Positives = 89/154 (57%)
Frame = +2
Query: 275 ITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVI 454
I PLGAGQ+VGRSCI+L G+ IMLDCG+H G P I P ++ID ++
Sbjct: 14 IRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDP-----AEIDLLL 68
Query: 455 ISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQM 634
ISHFHLDHCGALP+ + + G +MTH TKAI LL D KV+ + +T
Sbjct: 69 ISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYTETD 127
Query: 635 IKDCMKKVTAVTLHQSVMVDNELEIKAYYAGHVL 736
+++ M K+ + H+ V ++ Y+AGHVL
Sbjct: 128 LEESMDKIETINFHEVKEVAG-IKFWCYHAGHVL 160
>BC011654-1|AAH11654.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa protein.
Length = 684
Score = 122 bits (295), Expect = 1e-27
Identities = 65/154 (42%), Positives = 88/154 (57%)
Frame = +2
Query: 275 ITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVI 454
I PLGAGQ+VGRSCI+L G+ IMLDCG+H G P I P ++ID ++
Sbjct: 14 IRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDP-----AEIDLLL 68
Query: 455 ISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQM 634
ISHFHLDHCGALP+ + + G +MTH TKAI LL D KV+ + +T
Sbjct: 69 ISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYTETD 127
Query: 635 IKDCMKKVTAVTLHQSVMVDNELEIKAYYAGHVL 736
+++ M K+ + H V ++ Y+AGHVL
Sbjct: 128 LEESMDKIETINFH-GVKEVAGIKFWCYHAGHVL 160
>AL139287-7|CAI23176.1| 514|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 514
Score = 83.0 bits (196), Expect = 1e-15
Identities = 32/42 (76%), Positives = 41/42 (97%)
Frame = +2
Query: 260 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDE 385
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+
Sbjct: 16 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDD 57
Score = 35.5 bits (78), Expect = 0.20
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +2
Query: 689 VDNELEIKAYYAGHVL 736
VD+ELEIKAYYAGHVL
Sbjct: 58 VDDELEIKAYYAGHVL 73
>AK021939-1|BAB13943.1| 499|Homo sapiens protein ( Homo sapiens
cDNA FLJ11877 fis, clone HEMBA1007087, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 499
Score = 83.0 bits (196), Expect = 1e-15
Identities = 32/42 (76%), Positives = 41/42 (97%)
Frame = +2
Query: 260 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDE 385
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDD 42
Score = 35.5 bits (78), Expect = 0.20
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +2
Query: 689 VDNELEIKAYYAGHVL 736
VD+ELEIKAYYAGHVL
Sbjct: 43 VDDELEIKAYYAGHVL 58
>BC000675-1|AAH00675.2| 473|Homo sapiens CPSF3L protein protein.
Length = 473
Score = 60.5 bits (140), Expect = 6e-09
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = +2
Query: 641 DCMKKVTAVTLHQSVMVDNELEIKAYYAGHVL 736
DCMKKV AV LHQ+V VD+ELEIKAYYAGHVL
Sbjct: 1 DCMKKVVAVHLHQTVQVDDELEIKAYYAGHVL 32
>BC070095-1|AAH70095.1| 782|Homo sapiens cleavage and
polyadenylation specific factor 2, 100kDa protein.
Length = 782
Score = 48.0 bits (109), Expect = 3e-05
Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 3/159 (1%)
Frame = +2
Query: 269 IKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDC 448
IK+T L Q+ C LL + +LDCG DE D + + QID
Sbjct: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCGW-----DEHFSMDIIDSLRKH--VHQIDA 57
Query: 449 VIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 628
V++SH H GALPY +G IY T P + + + D+ + + + FT
Sbjct: 58 VLLSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQ-SRHNTEDFTLFTL 116
Query: 629 QMIKDCMKKVTAVTLHQSVMVDNE---LEIKAYYAGHVL 736
+ K+ + Q V + + L I AGH++
Sbjct: 117 DDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMI 155
>BC025267-1|AAH25267.1| 658|Homo sapiens integrator complex subunit
9 protein.
Length = 658
Score = 46.8 bits (106), Expect = 8e-05
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = +2
Query: 395 PDFSYIVPEGPITSQIDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLE 574
P+F E S +D ++IS++H ALPY++E G+TG +Y T PT I +L+E
Sbjct: 81 PEFCLPETELIDLSTVDVILISNYHC--MMALPYITEHTGFTGTVYATEPTVQIGRLLME 138
Query: 575 DM 580
++
Sbjct: 139 EL 140
>AK001733-1|BAA91867.1| 658|Homo sapiens protein ( Homo sapiens
cDNA FLJ10871 fis, clone NT2RP4001696, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 658
Score = 46.8 bits (106), Expect = 8e-05
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = +2
Query: 395 PDFSYIVPEGPITSQIDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLE 574
P+F E S +D ++IS++H ALPY++E G+TG +Y T PT I +L+E
Sbjct: 81 PEFCLPETELIDLSTVDVILISNYHC--MMALPYITEHTGFTGTVYATEPTVQIGRLLME 138
Query: 575 DM 580
++
Sbjct: 139 EL 140
>AL139287-8|CAI23179.1| 523|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 523
Score = 35.5 bits (78), Expect = 0.20
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +2
Query: 689 VDNELEIKAYYAGHVL 736
VD+ELEIKAYYAGHVL
Sbjct: 67 VDDELEIKAYYAGHVL 82
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,935,472
Number of Sequences: 237096
Number of extensions: 2514573
Number of successful extensions: 3933
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3926
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -