Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8c04
         (694 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       26   0.34 
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    26   0.34 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   1.0  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    24   1.4  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    23   2.4  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   5.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   7.2  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   7.2  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 356 HACNKPFKCARLDSFTCVS 300
           HA +KPF+C + D +TCV+
Sbjct: 253 HAGSKPFQCNKCD-YTCVN 270


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 356 HACNKPFKCARLDSFTCVS 300
           HA +KPF+C + D +TCV+
Sbjct: 11  HAGSKPFQCNKCD-YTCVN 28


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 19/84 (22%), Positives = 36/84 (42%)
 Frame = +2

Query: 323  NVHI*MACYKHARCF*VTVLKFRRENFYILNNSHSLQKSLYLDSNNVGKNDILKIKDESF 502
            +V + +  +  A C+  T L    +N YI+ N   ++      S  +GK  I  +     
Sbjct: 805  SVGVFLTIFNAAHCYLATELVLMLKNRYIILNGRLIKMETKAQSVALGK--ICTLHHHLS 862

Query: 503  LFLPLI*HLVHNKISVMFVIPFIL 574
              + L   +  + + +MF I F+L
Sbjct: 863  KLIRLFNEIFGHGLLLMFGISFLL 886


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 536 YELGVISTVKIKRIRLLFSKCHSYLHYWNLSTDFF 432
           Y +GVI T+    I  +F+K + +  Y N S   F
Sbjct: 44  YTIGVIITIGCLCIWSIFNKWNQFRSYSNFSVFLF 78


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 143 AGTYGKPSIGPKEAEKNVRNFSE 211
           AGTYG    GP   E  V  ++E
Sbjct: 280 AGTYGGSDAGPYTREMGVIGYNE 302


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 245 LQYGSNKGANQSGINFG 295
           L YG +K  N  G++FG
Sbjct: 263 LVYGMSKSRNIEGVSFG 279


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 127 VTGQKGWNLREAVNRTER 180
           V+ QK W L   +N TER
Sbjct: 268 VSKQKRWELARNLNLTER 285


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 303 LVLPKLIPLWLAPLFEP 253
           L LP++ PL L P+F P
Sbjct: 175 LPLPQVPPLPLPPIFAP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,837
Number of Sequences: 336
Number of extensions: 3679
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)