Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8c04
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    67   2e-12
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      37   0.002
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    31   0.21 
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    30   0.36 
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    28   1.1  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    28   1.5  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    28   1.5  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    26   4.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   4.5  

>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 44/90 (48%), Positives = 57/90 (63%), Gaps = 5/90 (5%)
 Frame = +2

Query: 5   MENINAFLEAARQL-GVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTY--GK-PSIG 172
           MENI+AF+  A+Q+  VP+Q+ FQT DL+ER+N   V+  + S  R A     GK   +G
Sbjct: 61  MENISAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVRGLG 120

Query: 173 PKEAEKNVRNFSEEQLRA-GQGVISLQYGS 259
           PK AEK  R FS +Q R   +GV SLQYGS
Sbjct: 121 PKLAEKKPRVFSAQQQREFREGVNSLQYGS 150


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +2

Query: 8   ENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 133
           +NIN FL+    +G+P    F+  D++E +NL  V+ C+ +L
Sbjct: 102 DNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 398 NFYILNNSHSLQKSLYLDSNNVGKNDILKIKDESF 502
           N+  L+N   L + +Y DSN+  K D+L+I +E +
Sbjct: 501 NYTTLSNKEFLIEGVYEDSNSRNKRDLLRINNEIY 535


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 17/76 (22%), Positives = 30/76 (39%)
 Frame = +2

Query: 8   ENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTYGKPSIGPKEAE 187
           E + AF+E A+Q G+P  E       W+   +      + +L +    Y    +      
Sbjct: 131 EELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYIINKLNSDPCW 190

Query: 188 KNVRNFSEEQLRAGQG 235
           +NVR    +    G+G
Sbjct: 191 RNVRFILSDASVPGEG 206


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 14  INAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 133
           +NAF      +G+     F+T DL  R N+  V+ CL +L
Sbjct: 127 LNAFFHFLDFIGMFTPFRFETKDLVRRFNIPKVIYCLHAL 166


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 25  PRSRKTVGCTGTGNFSNCRPVGETESQLRRDLLAVTGQKGWNLR 156
           P+ +  V CTG G+      V   +S    D L +TG+ G  L+
Sbjct: 119 PKFKNIVDCTGAGDVDTSVEVAAADS---NDYLTITGRSGRTLK 159


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 371 LRSI*HACNKPFKCARLDSFTCVSCY 294
           LRS   ACN   K  R DSF C  C+
Sbjct: 55  LRSSSVACNTCLKIIRNDSFHCTKCF 80


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 272 WRPYLNRTEEI*LPDQPGAAPRRSFARSSQLLSVLLTASRRFQ 144
           W  YLN  +E  +PD P     ++    + +L V+ T  R ++
Sbjct: 112 WNAYLNTLDETCMPDSPLLWKDKTCLEGTSMLDVINTNLRVYK 154


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = -2

Query: 501  KDSSFIFKMSFLPTLLESKYRL 436
            K+ S+++K+S +P+LLES  +L
Sbjct: 1581 KERSYLYKVSNIPSLLESAAKL 1602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,625
Number of Sequences: 5004
Number of extensions: 58741
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)