Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8c04
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476...    30   2.0  
03_01_0400 - 3102325-3102519,3103009-3103455,3105063-3105500           29   2.6  
01_05_0749 + 24890944-24891146,24891414-24891535,24891633-248917...    29   3.5  

>02_03_0026 -
           14045653-14045874,14047023-14047215,14047518-14047618,
           14050145-14050272,14050409-14050502,14050749-14051237,
           14052622-14052915,14053602-14053732,14053829-14055440,
           14055539-14055651,14055902-14056933,14057023-14057145,
           14057250-14057688
          Length = 1656

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/64 (34%), Positives = 33/64 (51%)
 Frame = +1

Query: 10  EYQRFPRSRKTVGCTGTGNFSNCRPVGETESQLRRDLLAVTGQKGWNLREAVNRTERS*E 189
           +YQR  R+RK    +GTGN ++  PV  T   +    L+  G+ G   R A++ TE+  E
Sbjct: 22  KYQREWRARKKAKLSGTGNVTSDSPVLAT--TISATELSEGGEVG---RSAISSTEKKEE 76

Query: 190 ERAK 201
              K
Sbjct: 77  RNRK 80


>03_01_0400 - 3102325-3102519,3103009-3103455,3105063-3105500
          Length = 359

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 125 QSLGRKAGTYGK-PSIGPKEAEKNVRNFSEEQLRAGQGVIS 244
           +S GRK   +   P+ G   AE +VRN S  QLR   G+++
Sbjct: 37  ESFGRKGLRFAADPATGAPTAELSVRNGSSLQLRLADGLVT 77


>01_05_0749 +
           24890944-24891146,24891414-24891535,24891633-24891721,
           24891813-24891848,24892268-24892367,24892524-24892566,
           24892645-24892739,24892978-24893036,24893114-24893613,
           24893691-24893772,24893864-24894429,24894520-24894655,
           24894750-24894812,24894942-24895172,24895282-24895395
          Length = 812

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +2

Query: 383 KFRRENFYILNNSHSLQKSLYLDSNNVGKNDILKIKDESFLFLP 514
           K+R  N  I + S S    ++ +SN++GK D ++ KDE+ + +P
Sbjct: 404 KYRNGNLVISSESLSHGLRIFQESNDLGK-DTVEAKDETEMVVP 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,001,468
Number of Sequences: 37544
Number of extensions: 336574
Number of successful extensions: 715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)