Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8c04
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 9e-17
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 1e-16
SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05) 64 8e-11
SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8) 64 1e-10
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 1e-06
SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 35 0.072
SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10) 33 0.29
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09) 33 0.29
SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_46783| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0017) 30 2.0
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 84.2 bits (199), Expect = 9e-17
Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 6/110 (5%)
Frame = +2
Query: 5 MENINAFLE-AARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTYGK--PSIGP 175
MENI FL LGV + FQTVDL+E+ N+ +V+ C+ ++GR+A + GK P +GP
Sbjct: 491 MENIGNFLSFIENNLGVAKNDLFQTVDLYEKSNMWNVICCIHAVGRRAYSLGKDVPQLGP 550
Query: 176 KEAEKNVRNFSEEQLRAGQGVI-SLQYG--SNKGANQSGINFGNTRHM*N 316
KE+ KN R F+E QL G+ +I S Q G + A SG +FG R + N
Sbjct: 551 KESTKNPRQFTERQLNEGKTIINSFQMGPAAKNVATASGQSFGRQRQIIN 600
>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 83.8 bits (198), Expect = 1e-16
Identities = 42/79 (53%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Frame = +2
Query: 5 MENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTYGKP--SIGPK 178
MEN FLE +GVP + FQTVDL+E+QN+ V+ + +LGRKA + GK ++GPK
Sbjct: 127 MENTGKFLEFCDTIGVPKTDMFQTVDLYEKQNMPGVINGIHALGRKAHSTGKTCLALGPK 186
Query: 179 EAEKNVRNFSEEQLRAGQG 235
EA N R F+EEQ RAGQG
Sbjct: 187 EASANPREFTEEQRRAGQG 205
>SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05)
Length = 195
Score = 64.5 bits (150), Expect = 8e-11
Identities = 35/79 (44%), Positives = 49/79 (62%)
Frame = +2
Query: 5 MENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTYGKPSIGPKEA 184
MENI FL LGV + + FQT DL++ N+ S + ++ L P++GPKEA
Sbjct: 85 MENIGNFLSHCGHLGVASGDQFQTADLYDNANMTSCQL-IKDLDI-------PTLGPKEA 136
Query: 185 EKNVRNFSEEQLRAGQGVI 241
E NVR F+EEQLRAG+ ++
Sbjct: 137 EANVREFTEEQLRAGESIL 155
>SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)
Length = 89
Score = 64.1 bits (149), Expect = 1e-10
Identities = 35/78 (44%), Positives = 47/78 (60%)
Frame = +2
Query: 5 MENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTYGKPSIGPKEA 184
MENI FL LGV + FQTVDL+E+QN+ + +A P +GPKEA
Sbjct: 18 MENIGNFLLFCESLGVSKVDLFQTVDLYEKQNMAAA---------RAKGLNCPQLGPKEA 68
Query: 185 EKNVRNFSEEQLRAGQGV 238
E N R+F E++LRAG+G+
Sbjct: 69 EANPRSFDEDKLRAGKGI 86
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 37.9 bits (84), Expect(2) = 1e-06
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 8 ENINAFLEAARQ--LGVPAQETFQTVDLWERQNLNSVVICLQSLGRK 142
ENI FL A ++ Q+ FQTV L+ERQNL V+ +Q+ RK
Sbjct: 899 ENIANFLNACQEEPFNCNPQDLFQTVYLFERQNLGQVISGIQAFARK 945
Score = 31.9 bits (69), Expect(2) = 1e-06
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +2
Query: 161 PSIGPKEAEKNVRNFSEE 214
P GPKEAEKN RNF E+
Sbjct: 986 PLFGPKEAEKNPRNFPEQ 1003
>SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +2
Query: 161 PSIGPKEAEKNVRNFSEEQLRAGQGVI 241
P++GPKEAE NVR F+EEQLRAG+ ++
Sbjct: 10 PTLGPKEAEANVREFTEEQLRAGESIL 36
>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 36.3 bits (80), Expect = 0.024
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +2
Query: 8 ENINAFLE-AARQLGVPAQETFQTVDLWERQNLNSV 112
ENI+ FL+ R LG+ FQTVDL+ERQN+ V
Sbjct: 341 ENISKFLDFCERVLGLDRLNLFQTVDLFERQNVGMV 376
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 34.7 bits (76), Expect = 0.072
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 5 MENINAFLEAARQLGVPAQETFQTVDLWERQNLNSV 112
M I FL+ GV + FQTVDL+E+QN+ V
Sbjct: 700 MVTIAKFLDFCGTFGVAKSDLFQTVDLYEKQNIQQV 735
>SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +2
Query: 2 CMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 133
CM+N++ FLEA ++LGV + + D+ + ++ V +Q+L
Sbjct: 372 CMKNVDYFLEACKKLGVDRELLCSSADILQEKSPQRVCATVQAL 415
>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
Length = 172
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 5 MENINAFLEAARQLGVPAQETFQTVDLWERQNLNSV 112
MENI F + GV +Q F T+DL+E +N++ V
Sbjct: 125 MENIENFCNFVQTKGVASQYQFVTIDLFEGKNMHQV 160
>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
Length = 959
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 8 ENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTYG 157
+N++ F+ R+L VP F+T DL +N +V++ L + RKA G
Sbjct: 108 DNVSNFIRWCRELRVPDVIMFETEDLVLNKNEKTVLLTLLEVARKAFKVG 157
>SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 5 MENINAFLEAARQLGVPAQETFQTVDLWERQNL 103
MENI F+ + GV + F TVDL+E++N+
Sbjct: 211 MENIGWFVNFIKSYGVQEEYIFVTVDLYEKRNV 243
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 77 VDLWERQNLNSVVICLQSLG 136
V +W +N +SVV+C+QSLG
Sbjct: 258 VSVWASENTSSVVVCVQSLG 277
>SB_46783| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0017)
Length = 322
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 204 SPRSSSGLVRESYLFSTVQIRAPTKAESTLVT-RDT 308
S R GLVR +L TVQ PTK + VT RDT
Sbjct: 252 SGRVHKGLVRSDHLVVTVQPTIPTKPQRRYVTFRDT 287
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,431,354
Number of Sequences: 59808
Number of extensions: 416821
Number of successful extensions: 893
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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