Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b23
         (156 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGL0 Cluster: Ribosomal protein S26e; n=1; Lonomia ob...    70   9e-12
UniRef50_Q0ZD84 Cluster: Ribosomal protein S26; n=9; Coelomata|R...    37   0.074
UniRef50_Q01E61 Cluster: Ribosomal protein S26, cytosolic; n=2; ...    34   0.69 
UniRef50_Q8LPJ7 Cluster: 40S ribosomal protein S26-2; n=4; Eukar...    32   2.1  
UniRef50_UPI000049A1F9 Cluster: 40S ribosomal protein S26; n=4; ...    31   3.7  
UniRef50_Q23PT4 Cluster: Ribosomal protein S26e containing prote...    31   3.7  
UniRef50_Q5JNZ5 Cluster: 40S ribosomal protein S26-like 1; n=110...    31   6.4  
UniRef50_Q0HZV9 Cluster: Putative uncharacterized protein; n=2; ...    30   8.5  

>UniRef50_Q5MGL0 Cluster: Ribosomal protein S26e; n=1; Lonomia
           obliqua|Rep: Ribosomal protein S26e - Lonomia obliqua
           (Moth)
          Length = 82

 Score = 70.1 bits (164), Expect = 9e-12
 Identities = 31/35 (88%), Positives = 33/35 (94%)
 Frame = +2

Query: 11  HSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 115
           HSKVVRNRSKKDRRIRTPPK+ FPRDM+RPQ VQR
Sbjct: 47  HSKVVRNRSKKDRRIRTPPKNTFPRDMARPQNVQR 81


>UniRef50_Q0ZD84 Cluster: Ribosomal protein S26; n=9; Coelomata|Rep:
           Ribosomal protein S26 - Pectinaria gouldii (Trumpet
           worm) (Ice-cream cone worm)
          Length = 109

 Score = 37.1 bits (82), Expect = 0.074
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +2

Query: 11  HSKVVRNRSKKDRRIRTPPKSNFPRDMSRP 100
           HSKVVRNRS++ R+ RTPP    P  M +P
Sbjct: 80  HSKVVRNRSREARKDRTPPPRFKPGAMRKP 109


>UniRef50_Q01E61 Cluster: Ribosomal protein S26, cytosolic; n=2;
           Ostreococcus|Rep: Ribosomal protein S26, cytosolic -
           Ostreococcus tauri
          Length = 221

 Score = 33.9 bits (74), Expect = 0.69
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +2

Query: 11  HSKVVRNRSKKDRRIRTPPK 70
           HSKVVR RS++ RRIR PPK
Sbjct: 189 HSKVVRVRSREARRIRDPPK 208


>UniRef50_Q8LPJ7 Cluster: 40S ribosomal protein S26-2; n=4;
           Eukaryota|Rep: 40S ribosomal protein S26-2 - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 133

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 11  HSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 112
           HS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 80  HSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQ 113


>UniRef50_UPI000049A1F9 Cluster: 40S ribosomal protein S26; n=4;
           Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
           protein S26 - Entamoeba histolytica HM-1:IMSS
          Length = 147

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 11  HSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 112
           H +VVR RS+ DRR R PPK    +  ++ QAV+
Sbjct: 80  HGRVVRVRSRTDRRNRLPPK-RVVKKTNKQQAVK 112


>UniRef50_Q23PT4 Cluster: Ribosomal protein S26e containing protein;
           n=12; Alveolata|Rep: Ribosomal protein S26e containing
           protein - Tetrahymena thermophila SB210
          Length = 197

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +2

Query: 11  HSKVVRNRSKKDRRIRTPPKSN 76
           HS+VVR R  +DRRIR PP  N
Sbjct: 160 HSRVVRVRCAEDRRIRRPPIRN 181


>UniRef50_Q5JNZ5 Cluster: 40S ribosomal protein S26-like 1; n=110;
           Fungi/Metazoa group|Rep: 40S ribosomal protein S26-like
           1 - Homo sapiens (Human)
          Length = 115

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +2

Query: 11  HSKVVRNRSKKDRRIRTPP 67
           HSKVVRNRS++  + RTPP
Sbjct: 80  HSKVVRNRSREACKDRTPP 98


>UniRef50_Q0HZV9 Cluster: Putative uncharacterized protein; n=2;
            Gammaproteobacteria|Rep: Putative uncharacterized protein
            - Shewanella sp. (strain MR-7)
          Length = 1067

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 8    SHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 97
            +++ +V NR   D R+R+P K +F RD++R
Sbjct: 983  AYTILVNNRKYGDSRVRSPAKESFLRDIAR 1012


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,620,600
Number of Sequences: 1657284
Number of extensions: 1396364
Number of successful extensions: 4692
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4692
length of database: 575,637,011
effective HSP length: 32
effective length of database: 522,603,923
effective search space used: 9929474537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)