Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b23
         (156 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   0.28 
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       19   3.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    19   4.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    19   5.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    18   7.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           18   7.9  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum
          methoprene-tolerant protein.
          Length = 516

 Score = 23.0 bits (47), Expect = 0.28
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 5  PSHSKVVRNRSKKDRR 52
          PS+S+ +RNR++K RR
Sbjct: 26 PSNSREMRNRAEKMRR 41


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 19.4 bits (38), Expect = 3.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 85  PREVTLGRSTDSSVFLRSVP 26
           PR+    RS   S  ++SVP
Sbjct: 56  PRDPNRARSVSYSTVIQSVP 75


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 19.0 bits (37), Expect = 4.5
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = -3

Query: 109 HCLWT*HVPREVTLGRSTDSSVFLRSVPDNFAVTG 5
           HC +  H+   + L     +   L  VP NF   G
Sbjct: 670 HCHFLFHIVIGMNLVLQVGTHADLPPVPPNFPTCG 704


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 18.6 bits (36), Expect = 5.9
 Identities = 5/5 (100%), Positives = 5/5 (100%)
 Frame = -3

Query: 112  LHCLW 98
            LHCLW
Sbjct: 1295 LHCLW 1299


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 18.2 bits (35), Expect = 7.9
 Identities = 7/33 (21%), Positives = 15/33 (45%)
 Frame = +3

Query: 3   RPVTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 101
           R    ++ G      + S+   +++S+G  H H
Sbjct: 333 RKSRGEVDGLGENMMDMSLTRHQISSMGHSHAH 365


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 18.2 bits (35), Expect = 7.9
 Identities = 7/33 (21%), Positives = 15/33 (45%)
 Frame = +3

Query: 3   RPVTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 101
           R    ++ G      + S+   +++S+G  H H
Sbjct: 333 RKSRGEVDGLGENMMDMSLTRHQISSMGHSHAH 365


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,923
Number of Sequences: 336
Number of extensions: 401
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 32
effective length of database: 111,833
effective search space used:  2124827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)