Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b23
         (156 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    34   0.002
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...    34   0.003
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   1.0  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    24   3.1  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 34.3 bits (75), Expect = 0.002
 Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
 Frame = +2

Query: 11  HSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 115
           HS+VVR RS++ RRIRT PP+  + RD  +  P AV +
Sbjct: 80  HSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 33.9 bits (74), Expect = 0.003
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
 Frame = +2

Query: 11  HSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 115
           H++VVR RS++ RRIRT PP+  + RD  R  P A+ +
Sbjct: 80  HARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
          subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 21 LSGTDRRKTEESVLLPRVTSLGT 89
          ++  DR +TE SVL  RVT +G+
Sbjct: 1  MAAVDRSRTEISVLSDRVTDVGS 23


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 53  IRTPPKSNFPRDMSR 97
           IRTP KS FP+D ++
Sbjct: 157 IRTPKKSYFPKDHAK 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 495,705
Number of Sequences: 5004
Number of extensions: 5854
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)