Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b23
         (156 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)              41   1e-04
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  29   0.45 
SB_39056| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_27000| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_21286| Best HMM Match : DUF352 (HMM E-Value=0.47)                   26   5.5  
SB_49331| Best HMM Match : DUF352 (HMM E-Value=0.47)                   26   5.5  
SB_55005| Best HMM Match : DUF1458 (HMM E-Value=1.8)                   25   7.3  
SB_3053| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   7.3  
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                25   9.7  
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)                 25   9.7  

>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +2

Query: 11  HSKVVRNRSKKDRRIRTPP 67
           HSKVVRNRSK+DR+IRTPP
Sbjct: 80  HSKVVRNRSKEDRKIRTPP 98


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 5    PSHSKVVRNRSKKDRRIRTPPKSNFPRDM 91
            P HS  V N S+K  RI   PKSN   D+
Sbjct: 3181 PKHSPGVSNASEKRERISETPKSNLELDI 3209


>SB_39056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 413

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 2   TPSHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQ 103
           TP+++++  N + +D  + T   +NF +DM   Q
Sbjct: 230 TPNYTRITENITHEDLLVTTSGLANFQKDMGFDQ 263


>SB_27000| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 85  PREVTLGRSTDSSVFLRSVPDNFAVTGR 2
           P  +T+  + DSS++L S P     +GR
Sbjct: 283 PASITINGTDDSSIYLASSPPELCPSGR 310


>SB_21286| Best HMM Match : DUF352 (HMM E-Value=0.47)
          Length = 690

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 20  VVRNRSKKDRRIRTPPKSNFPRDMSRPQ 103
           ++ NRS   RR+ T   S++P D  R Q
Sbjct: 145 IITNRSSFHRRVSTKSASSYPIDWKRIQ 172


>SB_49331| Best HMM Match : DUF352 (HMM E-Value=0.47)
          Length = 586

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 20  VVRNRSKKDRRIRTPPKSNFPRDMSRPQ 103
           ++ NRS   RR+ T   S++P D  R Q
Sbjct: 145 IITNRSSFHRRVSTKSASSYPIDWKRIQ 172


>SB_55005| Best HMM Match : DUF1458 (HMM E-Value=1.8)
          Length = 302

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 32  RSKKDRRIRTPPKSNFPRDMSRPQAV 109
           + K + + RT PKSN  +    PQA+
Sbjct: 68  KGKNEAKARTTPKSNNKKSYKTPQAL 93


>SB_3053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 32  RSKKDRRIRTPPKSNFPRDMSRPQAVQR 115
           +SKK  +++TPP  N P     P   +R
Sbjct: 2   KSKKSNQLQTPPDDNSPDQRPVPSQPER 29


>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 5   PSHSKVVRNRSKKDRRIRTPPKSNFPRDMSRP 100
           P +++  R   K+D R+  PP +  PR  SRP
Sbjct: 403 PYNARGTRPPDKRDTRVSQPPDTRDPRG-SRP 433


>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 1127

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 145 FYYLFNNKSLPLHCL 101
           + Y+++NK + LHCL
Sbjct: 555 YVYIYDNKGIELHCL 569


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,801,998
Number of Sequences: 59808
Number of extensions: 44121
Number of successful extensions: 143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 16,821,457
effective HSP length: 31
effective length of database: 14,967,409
effective search space used: 299348180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)