Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b23
         (156 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X14247-1|CAA32463.1|  114|Drosophila melanogaster ribosomal prot...    50   4e-07
X13625-1|CAB38441.1|  114|Drosophila melanogaster protein ( Dros...    50   4e-07
AY069761-1|AAL39906.1|  114|Drosophila melanogaster RE01079p pro...    50   4e-07
AE014134-2931|AAN11005.1|  114|Drosophila melanogaster CG10305-P...    50   4e-07
AE014134-2930|AAF53666.1|  114|Drosophila melanogaster CG10305-P...    50   4e-07
AE014134-2929|AAN11004.1|  114|Drosophila melanogaster CG10305-P...    50   4e-07
BT021222-1|AAX33370.1|  822|Drosophila melanogaster RH55640p pro...    27   3.5  
AE014134-2947|AAF53680.2|  822|Drosophila melanogaster CG10333-P...    27   3.5  
AE013599-1870|AAF58263.1|  559|Drosophila melanogaster CG8589-PA...    26   8.2  

>X14247-1|CAA32463.1|  114|Drosophila melanogaster ribosomal protein
           S31 protein.
          Length = 114

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 21/29 (72%), Positives = 26/29 (89%)
 Frame = +2

Query: 11  HSKVVRNRSKKDRRIRTPPKSNFPRDMSR 97
           HSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 80  HSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>X13625-1|CAB38441.1|  114|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for putative ribosomal
           protein S31. ).
          Length = 114

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 21/29 (72%), Positives = 26/29 (89%)
 Frame = +2

Query: 11  HSKVVRNRSKKDRRIRTPPKSNFPRDMSR 97
           HSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 80  HSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AY069761-1|AAL39906.1|  114|Drosophila melanogaster RE01079p
           protein.
          Length = 114

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 21/29 (72%), Positives = 26/29 (89%)
 Frame = +2

Query: 11  HSKVVRNRSKKDRRIRTPPKSNFPRDMSR 97
           HSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 80  HSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2931|AAN11005.1|  114|Drosophila melanogaster CG10305-PC,
           isoform C protein.
          Length = 114

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 21/29 (72%), Positives = 26/29 (89%)
 Frame = +2

Query: 11  HSKVVRNRSKKDRRIRTPPKSNFPRDMSR 97
           HSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 80  HSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2930|AAF53666.1|  114|Drosophila melanogaster CG10305-PB,
           isoform B protein.
          Length = 114

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 21/29 (72%), Positives = 26/29 (89%)
 Frame = +2

Query: 11  HSKVVRNRSKKDRRIRTPPKSNFPRDMSR 97
           HSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 80  HSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2929|AAN11004.1|  114|Drosophila melanogaster CG10305-PA,
           isoform A protein.
          Length = 114

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 21/29 (72%), Positives = 26/29 (89%)
 Frame = +2

Query: 11  HSKVVRNRSKKDRRIRTPPKSNFPRDMSR 97
           HSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 80  HSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>BT021222-1|AAX33370.1|  822|Drosophila melanogaster RH55640p
           protein.
          Length = 822

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 26  RNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 115
           R+RS++DR  R  P+   PRD  R ++ +R
Sbjct: 52  RSRSREDRNRRRSPERQRPRDNVRERSRER 81


>AE014134-2947|AAF53680.2|  822|Drosophila melanogaster CG10333-PA
           protein.
          Length = 822

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 26  RNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 115
           R+RS++DR  R  P+   PRD  R ++ +R
Sbjct: 52  RSRSREDRNRRRSPERQRPRDNVRERSRER 81


>AE013599-1870|AAF58263.1|  559|Drosophila melanogaster CG8589-PA
           protein.
          Length = 559

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 55  DSSVFLRSVPDNFAVTG 5
           D+  FLRS+PD   VTG
Sbjct: 51  DAESFLRSIPDTVTVTG 67


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,414,304
Number of Sequences: 53049
Number of extensions: 64665
Number of successful extensions: 262
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 24,988,368
effective HSP length: 32
effective length of database: 23,290,800
effective search space used: 442525200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)