Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b23
         (156 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...    33   0.027
U58738-6|AAB00606.1|  118|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z35599-3|CAA84660.1|  542|Caenorhabditis elegans Hypothetical pr...    25   9.6  
Z32840-7|CAA83681.1|  542|Caenorhabditis elegans Hypothetical pr...    25   9.6  
Z32840-6|CAD01079.1|  336|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U25698-1|AAA92843.1|  542|Caenorhabditis elegans CCT-5 protein.        25   9.6  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score = 33.1 bits (72), Expect = 0.027
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +2

Query: 11  HSKVVRNRSKKDRRIRTPP 67
           HSKVVRNRS++ RR R PP
Sbjct: 80  HSKVVRNRSREARRDRNPP 98


>U58738-6|AAB00606.1|  118|Caenorhabditis elegans Hypothetical
           protein F31A9.1 protein.
          Length = 118

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = -3

Query: 73  TLGRSTDSSV--FLRSVPDNFAVTGR 2
           +L R+T SS+  F+R++ DN++V GR
Sbjct: 28  SLLRNTCSSILNFIRAINDNYSVKGR 53


>Z35599-3|CAA84660.1|  542|Caenorhabditis elegans Hypothetical
           protein C07G2.3a protein.
          Length = 542

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 82  REVTLGRSTDSSVFLRSVPDNFAVT 8
           RE+T G + D  + +   P+N AVT
Sbjct: 359 REITFGAAKDRMLSIEQCPNNKAVT 383


>Z32840-7|CAA83681.1|  542|Caenorhabditis elegans Hypothetical
           protein C07G2.3a protein.
          Length = 542

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 82  REVTLGRSTDSSVFLRSVPDNFAVT 8
           RE+T G + D  + +   P+N AVT
Sbjct: 359 REITFGAAKDRMLSIEQCPNNKAVT 383


>Z32840-6|CAD01079.1|  336|Caenorhabditis elegans Hypothetical
           protein C07G2.3b protein.
          Length = 336

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 82  REVTLGRSTDSSVFLRSVPDNFAVT 8
           RE+T G + D  + +   P+N AVT
Sbjct: 153 REITFGAAKDRMLSIEQCPNNKAVT 177


>U25698-1|AAA92843.1|  542|Caenorhabditis elegans CCT-5 protein.
          Length = 542

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 82  REVTLGRSTDSSVFLRSVPDNFAVT 8
           RE+T G + D  + +   P+N AVT
Sbjct: 359 REITFGAAKDRMLSIEQCPNNKAVT 383


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,941
Number of Sequences: 27780
Number of extensions: 34070
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)