Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b23
         (156 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   2.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   3.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   7.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    18   9.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 133 FNNKSLPLHCLWT*H 89
           F+  S+P H LW  H
Sbjct: 102 FHEMSIPNHYLWLYH 116


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 117 FLCTACGRDMSLGKLL 70
           ++C ACG+  +  K L
Sbjct: 204 YVCKACGKGFTCSKQL 219


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 133 FNNKSLPLHCLW 98
           F NKSLP+  +W
Sbjct: 48  FKNKSLPVIEIW 59


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 69  RVTSLGTCHVHRQCK 113
           R+TSL   HVH  CK
Sbjct: 90  RLTSLHELHVH-GCK 103


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 120 HFLCTACGRDMSLGKLLLG 64
           HF  T  GR+++L +  +G
Sbjct: 200 HFPATPTGREVALIEQTIG 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,877
Number of Sequences: 438
Number of extensions: 432
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 31
effective length of database: 132,765
effective search space used:  2655300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)