Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b19
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.8  
SB_47717| Best HMM Match : EGF (HMM E-Value=1.9e-29)                   29   3.7  
SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)                 28   6.5  
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2631

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 143  ARISFSCSWPSSPRILTIVSSSNNWQLANPSRHRLQS-LCVEHGVKVL*HSC 295
            A I    + P++PR++ +  S   W+ + PSR  L S L   H ++    SC
Sbjct: 2467 ADIKLEATPPATPRLIRVQESPRPWKRSAPSRQVLSSPLFSRHNIRDDLESC 2518


>SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +1

Query: 304 FDYYFGRRFNERHARV-VKNRNRITHLF----MVHIYQVYIRVHYCNNH*KKQQYNSKMH 468
           +D +       +H RV + +++   H++     +HIY  +IRVH  + H +   YN+   
Sbjct: 82  YDKHIRVHIYNKHIRVHIYDKHIRVHIYDKHIRIHIYDKHIRVHIYDKHIRVHIYNNTYV 141

Query: 469 FT 474
           +T
Sbjct: 142 YT 143



 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +1

Query: 304 FDYYFGRRFNERHARV-VKNRNRITHLF----MVHIYQVYIRVHYCNNH*KKQQYN 456
           +D +      ++H RV + +++   H++     VHIY  +IR+H  + H +   YN
Sbjct: 37  YDKHMRVHIYDKHMRVHIYDKHIRIHIYDKHIRVHIYDKHIRIHIYDKHIRVHIYN 92



 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +1

Query: 304 FDYYFGRRFNERHARV-VKNRNRITHLF----MVHIYQVYIRVHYCNNH*KKQQYN 456
           +D +      ++H R+ + +++   H++     +HIY  +IRVH  N H +   Y+
Sbjct: 46  YDKHMRVHIYDKHIRIHIYDKHIRVHIYDKHIRIHIYDKHIRVHIYNKHIRVHIYD 101


>SB_47717| Best HMM Match : EGF (HMM E-Value=1.9e-29)
          Length = 214

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 300 NTHECHKTLTPCSTHSDC 247
           N +EC++T +PCS H  C
Sbjct: 84  NVNECNETQSPCSEHGAC 101


>SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +1

Query: 268 RRQSFVTFVCIAFDYYFGRRFNERHARVVKNRNRITH-LFMVHIYQVYIRVHYCNNH*KK 444
           RR +F+T  C+ + YY  R     H  +  +  R  H L   H  +    +HY +     
Sbjct: 54  RRATFITIFCVHYTYYTTRTL---HVLLYTHTKRALHVLHYTHTKRALNVLHYTHAKRTL 110

Query: 445 QQYNSKMHFTYWRMSEYFCTY 507
            +    +H+T+ + + +   Y
Sbjct: 111 HRALHVLHYTHTKRALHVLHY 131


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 300 NTHECHKTLTPCSTHSDC 247
           N +EC++T +PCS H  C
Sbjct: 663 NVNECNETQSPCSEHGAC 680


>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 621

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 216 GSWLILRGTDCNRCVWSTASKFCDIRVY 299
           G WL+ + T C   VW  A ++   RVY
Sbjct: 518 GEWLLRKATSCEHEVWYQALRWRGERVY 545


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +2

Query: 14  SPGRKQLHKRAKPVSVSANNHTPVLGLHDRARSRSKAKQ*ASPARISFSCSWPSSPRILT 193
           SP    L      ++ ++   TP      R+RSRS+A+  ++P+    + S PS+P  +T
Sbjct: 181 SPASPALRSSLGSLAPTSRTSTPTSRSTPRSRSRSRARTPSTPS----TPSTPSTPSTIT 236

Query: 194 IVSSSNN 214
             S +++
Sbjct: 237 TSSRASS 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,160,133
Number of Sequences: 59808
Number of extensions: 413334
Number of successful extensions: 1081
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)