Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8b13
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 217 1e-57
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 58 8e-10
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 30 0.33
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 29 0.57
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 1.7
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 1.7
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 27 3.0
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 4.0
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 4.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.3
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 25 7.0
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 7.0
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 25 9.3
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 9.3
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 217 bits (529), Expect = 1e-57
Identities = 102/176 (57%), Positives = 134/176 (76%)
Frame = +1
Query: 115 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 294
K+ YF K+ L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 295 DNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 474
++ P LE+LLP ++GNVGFVFT DL EVR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68 NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127
Query: 475 LGPEKTSFFQALSIPTKISKGTIEIINDVXVLKPGDKVGASEATLLNMLNISPFSY 642
+ P KTSFFQAL IPTKI++GTIEI +DV ++ KVG SEATLLNMLNISPF+Y
Sbjct: 128 MEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTY 183
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 58.4 bits (135), Expect = 8e-10
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 19/212 (8%)
Frame = +1
Query: 52 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 231
K RS TL++ ++ K+ F + Q LD + +I N+ + +++IR +
Sbjct: 3 KSRRSKVLTLAQTEKKGHEG-KAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWK 61
Query: 232 GSSIVLMGKNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLL 396
GS I MGK +M KA+ ++H +N L KLL G VG +FT EV
Sbjct: 62 GSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YF 116
Query: 397 ENKVQAP-ARPGAIAPLSVVIPA----HNTGLGPEKTSFF---------QALSIPTKISK 534
E+ VQ AR GA+AP + VIPA G P + + L +PT +
Sbjct: 117 ESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKN 176
Query: 535 GTIEIINDVXVLKPGDKVGASEATLLNMLNIS 630
G + ++ D + G ++ + + LL + I+
Sbjct: 177 GVVTLLADFPLCTEGQQLDSRQTRLLKLFGIT 208
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 245 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 352
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 29.1 bits (62), Expect = 0.57
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = -2
Query: 587 TLSPGFKTXTSLM----ISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 426
T S T +SL+ IS P + L+GI AW E S R + T+ +AP
Sbjct: 273 TFSGAIHTVSSLINPEIISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 311 RAGLLSRWSLMALRIIVFFPMSTILEPR 228
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 389 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 264
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 558 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 436
IVD NS + R + L ++G+L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 4.0
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -2
Query: 485 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 315
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 314 SRAGL 300
S L
Sbjct: 195 SEEEL 199
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 404 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 243
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = +2
Query: 281 SKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP 460
S T T+ + C TS + L + +P ++ + TNC T + + P+ +
Sbjct: 518 SSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTIS 576
Query: 461 PTTPAS 478
+TP +
Sbjct: 577 SSTPVT 582
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 163 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 309
K IVGA NVGS + +S + IV++ N +KA + +D N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 558 IVDDFNSTL*NLGRDRKSL 502
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 12 ICPARKSCVLSCP*ISSKSLRH 77
I PA++ LSCP + SK + H
Sbjct: 490 IVPAKERAYLSCPKVWSKIINH 511
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +2
Query: 278 PSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSF 457
PS + W T+ SR SR +S SP+ S + + K L L+ + +S++
Sbjct: 187 PSNSYWKTVIGSREMFEDSRKKTSSPSPSFASSKDAGTIPAIQKKKSL-LIEMMETESTY 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,807
Number of Sequences: 5004
Number of extensions: 58655
Number of successful extensions: 175
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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