Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8b13
(642 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 228 3e-60
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 34 0.11
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 29 2.4
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 3.2
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10) 29 4.2
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 28 5.6
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 5.6
SB_24713| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69) 27 9.8
SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5) 27 9.8
SB_6695| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6) 27 9.8
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 228 bits (557), Expect = 3e-60
Identities = 107/151 (70%), Positives = 127/151 (84%)
Frame = +1
Query: 142 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL 321
Q LDEYPK F+VG DNVGS+QMQ IR SLRG VLMGKNTM+RKAI+ HL+NNP LEKL
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60
Query: 322 LPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFF 501
LPHIKGN+GFVFT+ DL +VR ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFF
Sbjct: 61 LPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFF 120
Query: 502 QALSIPTKISKGTIEIINDVXVLKPGDKVGA 594
QAL+IPTKI++GTIEIINDV ++K +K+ A
Sbjct: 121 QALAIPTKIARGTIEIINDVHLIKKDEKLKA 151
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 35.1 bits (77), Expect = 0.049
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +1
Query: 256 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 372
K T++RK +K HLDN P L K LP + G + + + GDL
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = -1
Query: 558 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 436
I+D NS + R K+LEERGLL+ +GV GG + ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Frame = +2
Query: 173 SWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*C-AKPSKTTWTTIQPSRNCCHTSRATLA 349
S VP+T + + + P + + + T KP + + CC+ +A A
Sbjct: 580 SSVPLTQFQAQLQQQQPAQATPTNAATQDTDSAPCKPICLKFCVTLCPQKCCNKGKAAAA 639
Query: 350 SCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP----PTTPA 475
+ +P + + T T++ + P P C P P+ PA
Sbjct: 640 AAAPTKPPTAAPTTAAATQAAPAAMTCPQPACAPQSPMSCMPSCPA 685
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 397 ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVXVL 570
E ++ +PA +P S+ TGL P S Q LS+ T + ++ D+
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128
Query: 571 KPGDK 585
PG K
Sbjct: 2129 TPGKK 2133
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 464 WAGMTTDNGAMAPGRAGAWTLFSNSL 387
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
Length = 543
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = -2
Query: 599 SEAPTLSPGFKTXTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMT 450
S P L P S I+P EILVG+ER +K V G L MT
Sbjct: 258 SNGPPLEPKVWDLESAEWPIIPGEILVGLER--RKPVLKGLLITLCENMT 305
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 401 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 291
FS+S + T KP +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 156 VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKK 260
VPKMFH RG+ T+A P + T +L+ R G++
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRR 3891
>SB_24713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -1
Query: 174 DETFWVLVQELDDLNEV-VRLPSSLVLPTHPG*CGVGTSMKFKDKT-KRTTFVRDKF 10
D+ FW++V+EL+ NE+ + + L G G S + ++K KR +R++F
Sbjct: 144 DDEFWLIVRELERYNELKAAIRARHGLAPRDEKSGKGPSPEAREKAKKRARTIREEF 200
>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
Length = 430
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 299 TIQPSRNCCHTSRATLAS-CSPAETSLRSVTNCWRTKSKLQLVLVPL 436
+I+P+R C HTS L++ S+R C T SK+ V L
Sbjct: 71 SIRPARCCQHTSSKVLSTYVQQGVVSIRPARCCQHTSSKVLSTYVQL 117
>SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5)
Length = 152
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 211 QIRISLRGSSIVLMGKNTMMRKAIKDHLDNNP 306
Q+R L S +L+G NT+++ A+ D L P
Sbjct: 23 QVRPGLTALSTILLGANTVIQAALPDILAKTP 54
>SB_6695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +3
Query: 141 PTLGRVPKMFHRGCR*RGLATDAADPYLATWLQYRAH---GKKHNDAQSHQRPPGQQSS 308
P R+ KMF G + RG++ D + T H KK QS Q+ G +SS
Sbjct: 154 PDYSRLRKMFQNGLKKRGVSDDGRSVHF-TSPPANGHDDDSKKKKTVQSKQKAKGTKSS 211
>SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6)
Length = 342
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 287 TTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTN 391
TTWT ++ S R LA CS TS R+ TN
Sbjct: 67 TTWTALRGSTTSYRRRRTFLAPCS-INTSQRTSTN 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,014,725
Number of Sequences: 59808
Number of extensions: 485261
Number of successful extensions: 1308
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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