Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b12
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79601-5|CAB01882.1|  450|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z68303-7|CAA92642.2|  445|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF435979-1|AAM46663.1|  445|Caenorhabditis elegans equilibrative...    30   1.4  
AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot...    28   5.5  
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot...    28   5.5  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   5.5  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   5.5  
Z83218-2|CAB05687.1|  705|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z66520-1|CAA91388.1|  655|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z79601-5|CAB01882.1|  450|Caenorhabditis elegans Hypothetical
           protein K09A9.3 protein.
          Length = 450

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 455 RIHNNIVLRKSTNVHYSNAYLLFFSSISLLPGAITYIHDAFPKVTFKF 598
           ++ N I   K       N +L+FF ++S+ PG + Y+ D     T+ F
Sbjct: 267 KMANYIATFKEAFPQLINVFLVFFVTLSIFPGVMMYVKDEKKGGTYDF 314


>Z68303-7|CAA92642.2|  445|Caenorhabditis elegans Hypothetical
           protein ZK809.4 protein.
          Length = 445

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 455 RIHNNIVLRKSTNVHYSNAYLLFFSSISLLPGAITYIHD 571
           ++ N I   K       N +L+FF ++S+ PG + Y+ D
Sbjct: 262 KVANYIATFKEAFPQLINVFLVFFVTLSIFPGVMMYVKD 300


>AF435979-1|AAM46663.1|  445|Caenorhabditis elegans equilibrative
           nucleoside transporter1 protein.
          Length = 445

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 455 RIHNNIVLRKSTNVHYSNAYLLFFSSISLLPGAITYIHD 571
           ++ N I   K       N +L+FF ++S+ PG + Y+ D
Sbjct: 262 KVANYIATFKEAFPQLINVFLVFFVTLSIFPGVMMYVKD 300


>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
            protein.
          Length = 2693

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 5    LLLHGRNRQGGGTYRCGLTIKYSYESAE 88
            L+ H    Q  G YRC +T KY Y  +E
Sbjct: 1575 LVCHAVQSQDTGKYRCVVTNKYGYAESE 1602


>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
            protein.
          Length = 2708

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 5    LLLHGRNRQGGGTYRCGLTIKYSYESAE 88
            L+ H    Q  G YRC +T KY Y  +E
Sbjct: 1590 LVCHAVQSQDTGKYRCVVTNKYGYAESE 1617


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 5     LLLHGRNRQGGGTYRCGLTIKYSYESAE 88
             L+ H    Q  G YRC +T KY Y  +E
Sbjct: 17401 LVCHAVQSQDTGKYRCVVTNKYGYAESE 17428


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 5     LLLHGRNRQGGGTYRCGLTIKYSYESAE 88
             L+ H    Q  G YRC +T KY Y  +E
Sbjct: 17416 LVCHAVQSQDTGKYRCVVTNKYGYAESE 17443


>Z83218-2|CAB05687.1|  705|Caenorhabditis elegans Hypothetical
           protein C31A11.5 protein.
          Length = 705

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +3

Query: 468 ILYYVNLQMYTIV----THTYFFFQVYPYYLEPLPI 563
           I++YV L MY ++     H Y  FQ++ YY  P  +
Sbjct: 602 IVHYVVLYMYLMIGDASIHFYSSFQIFMYYAVPTTV 637


>Z66520-1|CAA91388.1|  655|Caenorhabditis elegans Hypothetical
           protein F49E12.1 protein.
          Length = 655

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 440 HLKYFRIHNNIVLRKSTNVHYSNAYLLFFSSISLLPGAITYI 565
           H  + R+HNN+  R      + NA  +F  S  ++ G +  I
Sbjct: 343 HTSFLRLHNNVAARLQNMNRHWNADRIFQESRKIVGGIVQVI 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,828,165
Number of Sequences: 27780
Number of extensions: 262377
Number of successful extensions: 522
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)