Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b12
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    22   4.8  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    22   4.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.4  

>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 99  QIYKNIFSECLKFTKNNGSYCSRFQ*TVECY 191
           Q+ K I +EC++  K     C+      +CY
Sbjct: 106 QLVKGIANECIENAKGETDECNIGNKYTDCY 136


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 99  QIYKNIFSECLKFTKNNGSYCSRFQ*TVECY 191
           Q+ K I +EC++  K     C+      +CY
Sbjct: 106 QLVKGIANECIENAKGETDECNIGNKYTDCY 136


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/37 (27%), Positives = 14/37 (37%)
 Frame = +2

Query: 5    LLLHGRNRQGGGTYRCGLTIKYSYESAEKSPSDLQEH 115
            +LLH ++   GG    G T+ Y           L  H
Sbjct: 1420 ILLHWKSGHNGGASLTGYTLHYRTAHGNLDELQLSRH 1456



 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 5   LLLHGRNRQGGGTYRCGLTIKYSYESAEKSPSDLQ 109
           L L+G NR+  G Y+C   ++ S     ++ ++LQ
Sbjct: 384 LRLNGINREDRGMYQC--IVRRSEGDTAQASAELQ 416


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/37 (27%), Positives = 14/37 (37%)
 Frame = +2

Query: 5    LLLHGRNRQGGGTYRCGLTIKYSYESAEKSPSDLQEH 115
            +LLH ++   GG    G T+ Y           L  H
Sbjct: 1416 ILLHWKSGHNGGASLTGYTLHYRTAHGNLDELQLSRH 1452



 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 5   LLLHGRNRQGGGTYRCGLTIKYSYESAEKSPSDLQ 109
           L L+G NR+  G Y+C   ++ S     ++ ++LQ
Sbjct: 384 LRLNGINREDRGMYQC--IVRRSEGDTAQASAELQ 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,880
Number of Sequences: 438
Number of extensions: 3331
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)