Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b11
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    27   3.4  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    25   7.9  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   7.9  

>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +3

Query: 465 CRR---TPRARRVRLCLVAKMRSSNRLRCQKRQTSLMDSHSTHGRQ 593
           CRR    P+A R+   L  + RS    R +++Q   + +   HGR+
Sbjct: 236 CRRPKLVPQATRLTEVLERQQRSDRERRLKQKQCDYLQTVCAHGRE 281


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 39  NDTRNHVSPSSCVASNLLRCSTCGPLA 119
           +D++  +  +S +ASNLLR S+ G L+
Sbjct: 38  SDSQKFIPSASPIASNLLRVSSYGKLS 64


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 367 TASCLTAFAASSAQLYHMRLYESPLPS 287
           T +CLT+    S++L HM  +   LPS
Sbjct: 469 TFACLTSKQLVSSELLHMTTFTQSLPS 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,428
Number of Sequences: 5004
Number of extensions: 41087
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)