Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8b11
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0825 + 28443961-28444099,28444527-28444603,28444710-284447... 31 0.66
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351... 31 0.87
03_06_0250 + 32645600-32646649,32647549-32647791,32648008-326482... 30 1.5
01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646 29 2.6
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492... 29 3.5
03_05_0390 - 23738892-23739392 29 3.5
01_03_0017 + 11677029-11677100,11677992-11678030,11678169-116783... 29 3.5
12_02_1226 - 27182423-27182768,27182855-27183765 29 4.6
02_02_0183 + 7576901-7576908,7577666-7578176 29 4.6
11_04_0140 - 13945911-13946195,13946290-13946772 28 6.1
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 28 6.1
03_05_0357 - 23424234-23424567,23424796-23424923,23425024-234252... 28 6.1
02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,522... 28 8.1
>04_04_0825 +
28443961-28444099,28444527-28444603,28444710-28444758,
28445283-28445367,28445506-28445755,28447053-28447373
Length = 306
Score = 31.5 bits (68), Expect = 0.66
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +2
Query: 215 ELETRL-RRHSHPRDITPPPEAMSPRRERTLVEAHVVELGRRGSEGCETRGRTVRTPSVV 391
E++ +L R+HS D P E + P +RT + G +GS+G + RT T
Sbjct: 89 EMQPQLQRKHSCGADEQVPREFLCPPLKRTRMGTEATYKGMQGSQGI-SEMRTTGT-QYC 146
Query: 392 VSDYSDGVAV--GATEEEVNWLR 454
+ DY +A+ EE + W R
Sbjct: 147 IDDYMQAMAMERRIKEEGLRWQR 169
>10_08_0267 -
16333239-16333820,16333904-16334842,16334920-16335172,
16336837-16337063,16338189-16339388
Length = 1066
Score = 31.1 bits (67), Expect = 0.87
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +1
Query: 292 GEDSRRGACGRAGQKRQRRL*DKRPYGQDAQCRCQRLLGWSCSGCYRRRSELVEVQVSVG 471
G DSRR C G K + + + Q++Q + ++ +CS R+RS + V G
Sbjct: 789 GPDSRRKLCNACGNKYRSGQLNSTTFSQNSQEQKKKSKSSACSR-ERKRSAVAATVVVGG 847
Query: 472 GLR 480
GLR
Sbjct: 848 GLR 850
>03_06_0250 +
32645600-32646649,32647549-32647791,32648008-32648229,
32648375-32648443,32650681-32650768,32651147-32651230,
32651494-32651582,32651933-32652046,32652513-32652647,
32652847-32653071
Length = 772
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 165 ELPSEDAAET*ATIPPLSSRL--GLGGTRIHAILPLHRRPCRRDGRG 299
E+ S+ AA A +PP S R+ G G + +++ LHRRP R G
Sbjct: 33 EMLSQPAAAL-ARLPPASVRVLVGFGAALLVSLVVLHRRPAARGAAG 78
>01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646
Length = 378
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -3
Query: 353 HSLRCLFCPALPHAPLRESSPVSATWPP 270
HS CL +P APL SSP+S PP
Sbjct: 220 HSSDCLTPAPMPPAPLSCSSPISIKQPP 247
>05_07_0093 -
27648656-27648736,27649034-27649147,27649229-27649288,
27649464-27649687,27649799-27649886,27650326-27650532,
27650566-27650784,27650903-27651001,27651439-27651504,
27651654-27651737,27651829-27651888,27652041-27652325,
27652789-27652836,27652988-27653034,27653442-27653556,
27653958-27654032,27654227-27654298,27654944-27656124,
27656613-27656757
Length = 1089
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -2
Query: 531 DSNSSSSRLDRVEHDEHAESADRDLDLNQ 445
D+ +S ++ +EHDEH +A+ D + N+
Sbjct: 307 DTVDQASHVEVIEHDEHTNAAENDEEANR 335
>03_05_0390 - 23738892-23739392
Length = 166
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 282 RRDGRGLS*RRMW*SWAEEAAKAVRQEAVRSGRPVSLSATTRMELQW 422
RR GR L RR W W EE A+R+ + + R + A R W
Sbjct: 7 RRRGRRLMGRRTWRRWREE---AMRRRGLMASRQRRVEARRRDATHW 50
>01_03_0017 +
11677029-11677100,11677992-11678030,11678169-11678341,
11679068-11679284,11679518-11679688,11679781-11679941,
11680025-11681069,11681320-11681466,11681547-11681774,
11681863-11682020,11682124-11682493
Length = 926
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -1
Query: 370 RTASCLTAFAASSAQLYHMRLY-ESPLPSRRHGLRWRGNIAWMRVPPKPS 224
R A+C+TA + + + L E LP R+ G WRGN A + + +PS
Sbjct: 295 REAACVTASSLGRVLMLDLILRNEDRLPCRQLG--WRGNPANLMISDRPS 342
>12_02_1226 - 27182423-27182768,27182855-27183765
Length = 418
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 521 EFESPTMPKKADEPHGLSQYSWTSAMPGAEPSRCLPFNTSHKPLLKKD 664
++ + T PKK +EP ++ + +P A P +P S P K+
Sbjct: 153 DYYATTQPKKPEEPPTVAAVQKDNCVPPAAPKPAVPATPSTSPPSNKE 200
>02_02_0183 + 7576901-7576908,7577666-7578176
Length = 172
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +1
Query: 274 GHVAETGEDSRRGACGRAGQKRQRRL*DKRPYG 372
G VA RR CGRAG KR +R D P G
Sbjct: 126 GSVARWRRWRRRRRCGRAGWKRGQRDGDAEPEG 158
>11_04_0140 - 13945911-13946195,13946290-13946772
Length = 255
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 180 DAAET*ATIPPLSSRLGLGGTRIHAILPLHRRPCRRDGR 296
D++++ P+ + GG R+H IL H R C+R+ R
Sbjct: 25 DSSQSSCIRRPMHTSKLTGGCRVHEILTGHERLCKRNFR 63
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 201 TIPPLSSRLGLGGTRIHAILPLH 269
T+PP S RLG+ +++H + P H
Sbjct: 638 TLPPSSYRLGVRPSKLHELFPSH 660
>03_05_0357 -
23424234-23424567,23424796-23424923,23425024-23425205,
23425255-23425504
Length = 297
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 180 DAAET*ATIPPLSSRLGLGGTRIHAILPLHRRPCRRDGR 296
D++++ P+ + GG R+H IL H R C+R+ R
Sbjct: 25 DSSQSSCIRRPMHTSKLTGGCRVHEILTGHERLCKRNFR 63
>02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,
5222445-5222793,5223189-5223510,5223621-5224123,
5224486-5224578,5224708-5224759,5224837-5225129,
5225208-5225630,5225734-5226070,5226185-5226220,
5226272-5226589,5227465-5228450
Length = 1637
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 108 RKYCIGAGSKRRKSSETRGCACRWKRVVGGARATAL 1
RKY AG +R S R A RWK +G A+ L
Sbjct: 1538 RKYLKCAGRERSNDSSGRDPALRWKLPLGTAKKEEL 1573
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,063,503
Number of Sequences: 37544
Number of extensions: 374865
Number of successful extensions: 1596
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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