Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b11
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5)                      29   4.7  
SB_58080| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4)               28   6.2  
SB_38708| Best HMM Match : p450 (HMM E-Value=1.4)                      28   6.2  
SB_59451| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_44830| Best HMM Match : I-set (HMM E-Value=1.1e-08)                 28   8.3  
SB_44117| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5)
          Length = 425

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 465 CRRTPRA--RRVRLCLVAKMRSSNR-LRCQKRQTSLMDSHSTHGRQQCQGQSQAAA 623
           C  TP    +R+   LVA+ RSSNR +   K+    + SHS+ GR     +  A+A
Sbjct: 217 CILTPPGSPKRLSAVLVARKRSSNRTVASSKQARQHISSHSSPGRTPPSSELVASA 272


>SB_58080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 218 LETRLRRHSHPRDITPPPEAMSPRRERTLVEAHVVELGRRGSEGCETRGRTVRTP 382
           L+++  R S   +I+PPP    P  E +L    ++ L     +   +RGR+ R+P
Sbjct: 553 LDSQGERGSVKFNISPPPYVPPPGYEDSLKRKSLMSLSVSSLDSRGSRGRSFRSP 607


>SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4)
          Length = 402

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 236 RHSHPRDITPPPEAMSPRRERTLVEAHVVELGRRGSEGCETRGRTVR 376
           R    R    PP + + R + TLVE H  +  R G    + R  TVR
Sbjct: 297 RQQSRRTACSPPHSTTDREDGTLVERHAPQAPRSGPGHDKRRTVTVR 343


>SB_38708| Best HMM Match : p450 (HMM E-Value=1.4)
          Length = 176

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 585 GRQQCQGQSQAAAYLLILPTSLF*KKTCHSARETP 689
           GR+ C GQS A A L ++   +  + T  + R+TP
Sbjct: 115 GRRVCVGQSVAKAELFLIVARMIQRYTFETPRDTP 149


>SB_59451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 268 TGGHVAETGEDSRRGACGRAGQKRQRRL*DK 360
           +G  + +TG DS R   GRA  +R R + DK
Sbjct: 132 SGSSLQQTGNDSPRARLGRALLRRAREISDK 162


>SB_44830| Best HMM Match : I-set (HMM E-Value=1.1e-08)
          Length = 480

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 9   WRARRRQPASNDTRNHVSPSSCVASNLLRCSTCGPL 116
           WR + ++P+   TRN V  S    +NL    T  PL
Sbjct: 387 WRRKPKRPSQAITRNSVDKSETPTANLQTSRTSTPL 422


>SB_44117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 298 DSRRGACGRAGQKRQRRL*DKRPYGQDAQCRCQRLLGWSCSGCYRRR 438
           D ++    R G +R+ +   KR   +  Q   +R LGW CS  Y+++
Sbjct: 165 DDKKRMEARKGARREEQA-KKREGNETQQKGNKRCLGWKCSYYYKKK 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,015,541
Number of Sequences: 59808
Number of extensions: 370974
Number of successful extensions: 1486
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1486
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)