Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b11
         (694 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061136-1|AAL28684.1|  372|Drosophila melanogaster LD11831p pro...    38   0.010
AE014298-1879|AAN09319.1|  372|Drosophila melanogaster CG15745-P...    38   0.010
AE014298-1878|AAF48250.1|  566|Drosophila melanogaster CG15745-P...    38   0.010
BT001759-1|AAN71514.1|  186|Drosophila melanogaster RH06474p pro...    29   4.5  

>AY061136-1|AAL28684.1|  372|Drosophila melanogaster LD11831p
           protein.
          Length = 372

 Score = 38.3 bits (85), Expect = 0.010
 Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 338 GSEGCETRGRTVRTPSVVVSDYSDGV-AVGATEEEVNWLR 454
           G  G     R VRTPSVVVSDYSD + A G + EE+ + R
Sbjct: 158 GVSGLPLGVRYVRTPSVVVSDYSDDITACGISMEEMEYFR 197


>AE014298-1879|AAN09319.1|  372|Drosophila melanogaster CG15745-PA,
           isoform A protein.
          Length = 372

 Score = 38.3 bits (85), Expect = 0.010
 Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 338 GSEGCETRGRTVRTPSVVVSDYSDGV-AVGATEEEVNWLR 454
           G  G     R VRTPSVVVSDYSD + A G + EE+ + R
Sbjct: 158 GVSGLPLGVRYVRTPSVVVSDYSDDITACGISMEEMEYFR 197


>AE014298-1878|AAF48250.1|  566|Drosophila melanogaster CG15745-PB,
           isoform B protein.
          Length = 566

 Score = 38.3 bits (85), Expect = 0.010
 Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 338 GSEGCETRGRTVRTPSVVVSDYSDGV-AVGATEEEVNWLR 454
           G  G     R VRTPSVVVSDYSD + A G + EE+ + R
Sbjct: 352 GVSGLPLGVRYVRTPSVVVSDYSDDITACGISMEEMEYFR 391


>BT001759-1|AAN71514.1|  186|Drosophila melanogaster RH06474p
           protein.
          Length = 186

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 338 LFCPALPHAPLRESSPVSATWPPVEG 261
           LF P   HAP+R  SP+    PP  G
Sbjct: 70  LFLPCKCHAPIRRHSPLPGKVPPTSG 95


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,415,068
Number of Sequences: 53049
Number of extensions: 550475
Number of successful extensions: 2190
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2190
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)