Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8b11
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF024502-5|AAB70376.1| 456|Caenorhabditis elegans Hypothetical ... 28 5.5
Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical p... 28 7.3
Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical pr... 28 7.3
AL023853-1|CAA19558.1| 370|Caenorhabditis elegans Hypothetical ... 28 7.3
AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP ... 28 7.3
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 27 9.6
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 442 HFFFCSTHCNSIRVVADNDTGRP 374
++F H N++R+V D +TGRP
Sbjct: 24 NYFAAVGHVNNVRIVYDRETGRP 46
>AF024502-5|AAB70376.1| 456|Caenorhabditis elegans Hypothetical
protein M151.5 protein.
Length = 456
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 445 IHFFFCSTHCNSI-RVVADNDTGRPDRTASCLTAFAA 338
+ FF + HC + RV+ + +PDRT + A+ A
Sbjct: 9 LFFFIFAVHCQIVTRVILFKNANQPDRTEELVKAYLA 45
>Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical protein
T01H8.5d protein.
Length = 1931
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -3
Query: 614 LALPLALLTSMSTVRVHEARLPFLAS*AIRTPHLR 510
L LPLA L++MS R HE S AIR P R
Sbjct: 1722 LPLPLAKLSTMSIRRRHEEYTSITDSIAIRHPERR 1756
>Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -3
Query: 614 LALPLALLTSMSTVRVHEARLPFLAS*AIRTPHLR 510
L LPLA L++MS R HE S AIR P R
Sbjct: 1762 LPLPLAKLSTMSIRRRHEEYTSITDSIAIRHPERR 1796
>Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -3
Query: 614 LALPLALLTSMSTVRVHEARLPFLAS*AIRTPHLR 510
L LPLA L++MS R HE S AIR P R
Sbjct: 1823 LPLPLAKLSTMSIRRRHEEYTSITDSIAIRHPERR 1857
>Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical
protein T01H8.5d protein.
Length = 1931
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -3
Query: 614 LALPLALLTSMSTVRVHEARLPFLAS*AIRTPHLR 510
L LPLA L++MS R HE S AIR P R
Sbjct: 1722 LPLPLAKLSTMSIRRRHEEYTSITDSIAIRHPERR 1756
>Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -3
Query: 614 LALPLALLTSMSTVRVHEARLPFLAS*AIRTPHLR 510
L LPLA L++MS R HE S AIR P R
Sbjct: 1762 LPLPLAKLSTMSIRRRHEEYTSITDSIAIRHPERR 1796
>Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -3
Query: 614 LALPLALLTSMSTVRVHEARLPFLAS*AIRTPHLR 510
L LPLA L++MS R HE S AIR P R
Sbjct: 1823 LPLPLAKLSTMSIRRRHEEYTSITDSIAIRHPERR 1857
>AL023853-1|CAA19558.1| 370|Caenorhabditis elegans Hypothetical
protein Y71A12C.1 protein.
Length = 370
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 310 GACGRAGQKRQRRL*DKRPYGQDA 381
G CG G + RL K PYG+D+
Sbjct: 347 GVCGEGGVREGERLEFKTPYGRDS 370
>AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1971
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -3
Query: 614 LALPLALLTSMSTVRVHEARLPFLAS*AIRTPHLR 510
L LPLA L++MS R HE S AIR P R
Sbjct: 1762 LPLPLAKLSTMSIRRRHEEYTSITDSIAIRHPERR 1796
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 442 HFFFCSTHCNSIRVVADNDTGRP 374
+FF N++R+V D +TGRP
Sbjct: 23 NFFSSIGQINNVRIVCDRETGRP 45
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,169,937
Number of Sequences: 27780
Number of extensions: 252014
Number of successful extensions: 996
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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