Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b11
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    29   0.042
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.8  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   3.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.4  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 29.1 bits (62), Expect = 0.042
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +2

Query: 341 SEGCETRGRTVRTPSVVVSDYSD 409
           S+  + R R  RTPSVVVSDYSD
Sbjct: 273 SDHNDGRLRYWRTPSVVVSDYSD 295


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 585  GRQQCQGQSQAAAYLLILPTSLF*KKTCHSARETP 689
            G+QQ   Q Q     +ILP+ L   KT H  +  P
Sbjct: 1227 GKQQ-PSQQQTQQQPIILPSQLLNIKTLHGLKVIP 1260


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 332 RRGSEGCETRGRTVRTPSVVVSDYSDGVAVGATEEE 439
           RRGS+G +   R  R+PS  +     G ++  ++ +
Sbjct: 90  RRGSDGSQLAMRNDRSPSYSMQVPQQGASIDDSDPD 125


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 332 RRGSEGCETRGRTVRTPSVVVSDYSDGVAVGATEEE 439
           RRGS+G +   R  R+PS  +     G ++  ++ +
Sbjct: 538 RRGSDGSQLAMRNDRSPSYSMQVPQQGASIDDSDPD 573


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 643 VGSIKR*AAAWLCPWHC 593
           VG  K+  A   C WHC
Sbjct: 593 VGQAKKYVAGEQCCWHC 609


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 521 EFESPTMPKKADEPHGLSQYSWTSAMPGA 607
           E   PTM K +D     SQ +   A PG+
Sbjct: 872 ENNQPTMNKCSDRKRPASQATSVKAEPGS 900


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,862
Number of Sequences: 438
Number of extensions: 2988
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)