Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b10
         (704 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0001509F63 Cluster: hypothetical protein TTHERM_0018...    35   1.7  
UniRef50_A6LL65 Cluster: NADH/Ubiquinone/plastoquinone; n=1; The...    35   2.2  
UniRef50_Q481B9 Cluster: Putative membrane protein; n=1; Colwell...    34   3.0  
UniRef50_A3LQ26 Cluster: Predicted protein; n=4; Saccharomycetal...    34   3.0  
UniRef50_Q5JHA9 Cluster: Putative uncharacterized protein; n=1; ...    34   3.0  
UniRef50_Q9BXA5 Cluster: Succinate receptor 1; n=19; Tetrapoda|R...    33   5.2  

>UniRef50_UPI0001509F63 Cluster: hypothetical protein TTHERM_00188900;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00188900 - Tetrahymena thermophila SB210
          Length = 1136

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
 Frame = +3

Query: 195  IILSSIDFYLSVIGNCL--VFIGFVIGKINSDN-----QYAFFISNLLILLGHLVALMTE 353
            +IL +++FY S +GN L   ++ F + ++N  N          ++ L ++  +   ++ +
Sbjct: 649  LILQNLNFYQSCVGNLLKQAYL-FKLNELNKKNNRIQQNLPNLVNELEVVSQNYPLILMK 707

Query: 354  LTTLYEDYLCLKNGKREYEMNSYFTFANILSILGEYKEMNFGMENVRT*MWNLNSALNES 533
            L    E+YL     K    ++S +  A +LS + +YK+     EN+     NL   LNE+
Sbjct: 708  LDVFPEEYLVSYYNKYFNSISSMYHRALLLSQIIKYKK----QENIPNIQQNLKDILNEA 763

Query: 534  FSV 542
             +V
Sbjct: 764  QNV 766


>UniRef50_A6LL65 Cluster: NADH/Ubiquinone/plastoquinone; n=1;
           Thermosipho melanesiensis BI429|Rep:
           NADH/Ubiquinone/plastoquinone - Thermosipho
           melanesiensis BI429
          Length = 401

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
 Frame = +3

Query: 195 IILSSIDFYLSVIGN--CLVFIGFVIGKINSDNQYAFF-----ISNLLILLGHL--VALM 347
           II  S  FY  V+ N  C + + + + K  +DN Y FF       NLL +   L  + ++
Sbjct: 26  IIFDSNSFYF-VLTNIICSLLVSYFLFKSKNDNIYLFFSLLHSALNLLFISNDLFNIYVL 84

Query: 348 TELTTLYEDYLCLKNGKREYEMNSY-FTFANILSI 449
            E +TL    L L N K EY++    + FA+ L++
Sbjct: 85  LETSTLLISLLILSNEKFEYKLTVIKYIFASSLAM 119


>UniRef50_Q481B9 Cluster: Putative membrane protein; n=1; Colwellia
           psychrerythraea 34H|Rep: Putative membrane protein -
           Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
           (Vibriopsychroerythus)
          Length = 286

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +3

Query: 261 VIGKINSDNQYAFFISNLLILLGHLVALMTELTTLYEDYLCLKNGKREYEMNSYFTFANI 440
           ++G +     Y  ++S    L  HLVAL + LT L   Y+ + N  R+     ++  A +
Sbjct: 61  LLGALQYGVMYTCYLSAFRYLPSHLVALFSVLTPL---YIVIINDLRQRSFTPWYLVATV 117

Query: 441 LSILG 455
           LS+ G
Sbjct: 118 LSVFG 122


>UniRef50_A3LQ26 Cluster: Predicted protein; n=4;
           Saccharomycetales|Rep: Predicted protein - Pichia
           stipitis (Yeast)
          Length = 404

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
 Frame = +3

Query: 228 VIGNCLVFIGFVI-GKINS--DNQYAFFISNLLILLGHLVALMTEL-----TTLYEDYLC 383
           ++G  L F G +I  KI+S  DN  +   S L+I  G+ +AL   L     T L +  + 
Sbjct: 209 IVGILLSFTGVIIVTKIDSSADNPNSNDKSTLMIFYGNALALSGALIYGIYTILLKQRIT 268

Query: 384 LKNGKREYEMNSYFTF 431
           +KN +RE E+N++  F
Sbjct: 269 IKNSRRERELNTHLFF 284


>UniRef50_Q5JHA9 Cluster: Putative uncharacterized protein; n=1;
           Thermococcus kodakarensis KOD1|Rep: Putative
           uncharacterized protein - Pyrococcus kodakaraensis
           (Thermococcus kodakaraensis)
          Length = 550

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 30/118 (25%), Positives = 48/118 (40%)
 Frame = +3

Query: 183 TKPRIILSSIDFYLSVIGNCLVFIGFVIGKINSDNQYAFFISNLLILLGHLVALMTELTT 362
           TK    LS I  Y S +     +   ++G  N  NQ       L  L    + L T LT 
Sbjct: 125 TKTAANLSGI-LYDSAVNGSDTYRMLLLGIENLTNQVRLLNETLPELADAYLKLETNLTI 183

Query: 363 LYEDYLCLKNGKREYEMNSYFTFANILSILGEYKEMNFGMENVRT*MWNLNSALNESF 536
           LY   L LK    E +M       N+     + KE+N  +  +   ++NL+ +  +++
Sbjct: 184 LYNQTLELKGALNETDMAYVQLHQNLTKASTQLKELNSTIAMLNIKLYNLSESYAKAY 241


>UniRef50_Q9BXA5 Cluster: Succinate receptor 1; n=19; Tetrapoda|Rep:
           Succinate receptor 1 - Homo sapiens (Human)
          Length = 330

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = +3

Query: 198 ILSSIDFYLSVIGNCLVFIGFV--IGKINSDNQYAF--FISNLLIL--LGHLVALMTELT 359
           I   I+F + V+GN +V  G++  +   NS N Y F   +S+L  L  L  L+       
Sbjct: 24  IFYGIEFVVGVLGNTIVVYGYIFSLKNWNSSNIYLFNLSVSDLAFLCTLPMLIRSYANGN 83

Query: 360 TLYEDYLCLKN 392
            +Y D LC+ N
Sbjct: 84  WIYGDVLCISN 94


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,334,114
Number of Sequences: 1657284
Number of extensions: 14533210
Number of successful extensions: 34023
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34011
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)