Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b10
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   4.6  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   4.6  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   4.6  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    26   6.0  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    25   8.0  

>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 319 MSKLLMKNAYWLSELIFPI 263
           M  + ++ AYWLS +IFP+
Sbjct: 708 MGLMSLRKAYWLSTVIFPL 726


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +3

Query: 315  LILLGHLVAL---MTELTTLYEDYLCLKNGK 398
            L L GH   +   MT++ T+ EDYL  KN K
Sbjct: 1199 LFLTGHKTLMFFQMTQIMTIMEDYLRSKNWK 1229


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
 Frame = +3

Query: 282 DNQYAFFISNLLILLGHLVALMTELTTLYEDYLCLKNGKREYEMNSYFTFANILSILGE- 458
           DN      ++L  L  HL  +  E  +LY     +   K E + +    F +I S+L E 
Sbjct: 711 DNHLIILCASLHSLKAHLPTIFDENKSLYSLLPVILFSKPEDDGHVAAHFESIFSLLKEK 770

Query: 459 -YKEMNFGMENV-RT*MWNLNSALNESFS 539
             ++  F ++       W+LN  LN S +
Sbjct: 771 ALEDSGFSLKLCSEVQEWSLNKVLNGSIN 799


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 170 MSTTNKAQDYFVFYRLLLISNRKLSSIHRICNWKD*L**PIRILHQQ 310
           +S  ++  ++FV Y + LI +RK     R+ +  D     IR+ H+Q
Sbjct: 329 LSQEHRLDEFFVSYWVSLIKSRKQKDKKRLISLLDTSISQIRVTHEQ 375


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 141 IISKMPQTNGCQLRTKPRIILSSIDFYLSVIGNCLVFIGFVIGKINSDNQYAFFI 305
           II ++P +N      +PRI +S I   + V+G C   +G   G   S     FF+
Sbjct: 141 IIFEVP-SNLMMAFIEPRIWVSRIQLTIGVVGACHAVLGTKHGNAQSYVALRFFL 194


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 218 LLISNRKLSSIHRICN 265
           +L +NR  SS+HR+CN
Sbjct: 323 ILTNNRYKSSMHRVCN 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,076,953
Number of Sequences: 5004
Number of extensions: 66194
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)