Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b10
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0759 - 36059872-36059928,36059934-36060125,36060241-360603...    30   1.6  
11_08_0011 + 27612206-27615110,27615211-27615538,27615989-276160...    28   8.3  
04_04_0674 + 27173948-27174188,27174704-27175260,27175310-271753...    28   8.3  

>03_06_0759 -
           36059872-36059928,36059934-36060125,36060241-36060348,
           36060440-36060712,36060923-36061009,36061085-36061276,
           36061841-36061969,36062087-36062200,36062446-36062490,
           36062785-36062956,36063229-36063515,36063989-36064456
          Length = 707

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +3

Query: 201 LSSIDF-YLSVIGNCLVFIGFVIGKINSDNQYAFFISNLLILLGHLVALMTELTTLYED- 374
           LSSI F +L  I + LVF  F+IG  N  N + +F+  + + L    ALM  +  ++ D 
Sbjct: 520 LSSIPFLFLVTISSSLVFY-FLIGLRNEFNLFMYFVVTMFMCLLANEALMMIVAYIWLDT 578

Query: 375 YLC 383
           Y C
Sbjct: 579 YKC 581


>11_08_0011 +
           27612206-27615110,27615211-27615538,27615989-27616059,
           27616962-27617118,27617676-27617709
          Length = 1164

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
 Frame = +3

Query: 165 NGCQLRTKPRIILSSID--FYLSVIGNCLVFIGFVIGKINSDNQYAFFISNLLILLGHLV 338
           NGC L     + +  +D  + L ++GN L   G +   + + +  A  + N   L G + 
Sbjct: 353 NGCNLTGAIPVDIGQLDQLWELQLLGNQLT--GPIPASLGNLSSLARLVLNENQLDGSVP 410

Query: 339 ALMTELTTLYEDYLCLKNGKREYEMNSYFTFANILSILGEYKEMNFGMENVRT*MWNLNS 518
           A +  +  L  D++  +N +   ++N   TF+N  ++   Y  MN+   ++   + NL+ 
Sbjct: 411 ASIGNINYL-TDFIVSEN-RLHGDLNFLSTFSNCRNLSWIYIGMNYFTGSIPDYIGNLSG 468

Query: 519 ALNE 530
            L E
Sbjct: 469 TLQE 472


>04_04_0674 +
           27173948-27174188,27174704-27175260,27175310-27175399,
           27175475-27175714,27175801-27176022,27176124-27176433,
           27176528-27176847,27176906-27177021,27177133-27177227,
           27177331-27177407,27177520-27177615
          Length = 787

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 691 DLRERRDVQSVQPHLVRAGPHIQTAPRHSPEPLY 590
           D+R+RR V S+   + R  P  ++  R  P P+Y
Sbjct: 524 DIRDRRPVMSIPDRVRRLPPPERSYDRRPPAPVY 557


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,181,031
Number of Sequences: 37544
Number of extensions: 360206
Number of successful extensions: 865
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)