Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b10
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                31   1.2  
SB_4095| Best HMM Match : LRR_adjacent (HMM E-Value=2)                 30   2.1  
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                29   3.7  
SB_44557| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_48397| Best HMM Match : TPR_2 (HMM E-Value=6.6e-26)                 29   4.9  
SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)                   28   8.5  
SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)         28   8.5  
SB_18541| Best HMM Match : PAN (HMM E-Value=0.0099)                    28   8.5  
SB_5008| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  

>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 592  IMALGYVLEQFGYVDPPLPSAVVLIG 669
            + AL + L+  G VDP +PSAV+ IG
Sbjct: 3620 VSALSFRLDASGVVDPTVPSAVIAIG 3645


>SB_4095| Best HMM Match : LRR_adjacent (HMM E-Value=2)
          Length = 113

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 153 MPQTNGCQLRTKPRIILSSIDFYLSVIGNCLVFIGFVIGKINSDNQY 293
           +PQ +G QL   P++ +    F   V+ +    +GF+  ++N +N +
Sbjct: 47  LPQKSGTQLSRVPKVAIGKTQFRGKVLTSLEDNVGFMFAEVNLENGF 93


>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 628

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 582 RSLYNGSGLCLGAVWIC 632
           R  YN SGLC+   W+C
Sbjct: 198 RCFYNSSGLCISTSWLC 214


>SB_44557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 195 IILSSIDFYLSVIGNCLVFIGFVIGKINSDNQYAFFISNLLI 320
           ++L ++ F +   GNC+V  G +    N     +FFI+NL +
Sbjct: 48  LVLYTVIFIIGFFGNCIVIYGVMQQGANKTTS-SFFIANLAL 88


>SB_48397| Best HMM Match : TPR_2 (HMM E-Value=6.6e-26)
          Length = 598

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 399 REYEMNSYFTFANILSILGEYKE 467
           +EYE+ SY   ANI   LG+Y E
Sbjct: 263 KEYELKSYVKLANISQRLGDYLE 285


>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
          Length = 1115

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 33  YKTKCCPFGYWHKKQNHQEPTKILTIVFCNT*L*AAIISKMPQTNGCQLRTKPRIILSSI 212
           +K + CP G + +K NH        I  CN    + I +K+    G  L +K  +I    
Sbjct: 489 FKCEPCPLGTYMEKDNHM-------ITGCN----SCIGNKVTSATG-SLSSKDCVIPCKA 536

Query: 213 DFYLSV-IGNC 242
            +Y SV +GNC
Sbjct: 537 GYYYSVEVGNC 547


>SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 574 PYVGHCIMALGYVLEQFGYVDPPLPSAVVLIGHLCVL 684
           P +GH    LG+     G+  P L     L+GH C L
Sbjct: 76  PTLGHTRPTLGHTRPMLGHTRPMLGHTHPLLGHTCRL 112


>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
          Length = 445

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 307 LMKNAY--WLSELIFPITNPMNTRQFPITDK*KSIE 206
           +  N Y  WLS  +F  T  +NTR FP  D+  ++E
Sbjct: 86  IRSNGYNSWLSPAMFKSTCDVNTRYFPFDDQHCTLE 121


>SB_18541| Best HMM Match : PAN (HMM E-Value=0.0099)
          Length = 162

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +3

Query: 219 YLSVIGNCLVFIGFVIGKINSDNQYA--FFISNLLILLGHLVALMTELTTLYEDYLCLKN 392
           +L V G CL    FV GK    + ++  F +      LG ++    E T++    LCLKN
Sbjct: 9   WLLVFGACLS-CSFVCGKNQEKHSFSAYFKVHENTRKLGEILKTKPEETSIICALLCLKN 67

Query: 393 GKREYEMNSY 422
            K    MN Y
Sbjct: 68  PKCN-SMNFY 76


>SB_5008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 114 RRLLIFWLVLDDFVSCANTRTDN 46
           R +L FWL  D+F S   T+ DN
Sbjct: 318 RHMLEFWLTADNFQSMLKTKMDN 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,965,320
Number of Sequences: 59808
Number of extensions: 449856
Number of successful extensions: 927
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)