Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b10
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-17|CAB07693.2|  751|Caenorhabditis elegans Hypothetical p...    27   9.9  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   9.9  
AF068720-6|AAC17784.1|  541|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z93393-17|CAB07693.2|  751|Caenorhabditis elegans Hypothetical
           protein Y48E1B.7 protein.
          Length = 751

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 66  HKKQNHQEPTKILTIVFCN 122
           H +Q HQ PT+I T+VF N
Sbjct: 231 HMEQIHQAPTQIKTMVFTN 249


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 556 HQIDHTLKD-SFSALFKFHIHVRTFSIPKFISLYSP 452
           H I+H  K+  F  +F  H H    S+  F+S  SP
Sbjct: 41  HDIEHLAKELHFQKVFDHHAHDGHISLKGFLSFISP 76


>AF068720-6|AAC17784.1|  541|Caenorhabditis elegans Hypothetical
           protein K02H11.4 protein.
          Length = 541

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 526 FSALFKFHIHVRTFSIPK 473
           F++LF FH ++RTF  PK
Sbjct: 325 FASLFYFHPNIRTFQYPK 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,756,138
Number of Sequences: 27780
Number of extensions: 361187
Number of successful extensions: 969
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)