Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b09
         (431 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42321| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_478| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   5.0  
SB_57101| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_46807| Best HMM Match : DUF827 (HMM E-Value=0.28)                   27   6.6  
SB_2889| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.6  
SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74)                  27   8.7  

>SB_42321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 648

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = -2

Query: 295 RSAPTQRERSQRANQKRKTAQRHD*FKAKTQS**HAQQHQNET 167
           + A TQ+++++R NQ+ KT+QR    K K +     Q+++NET
Sbjct: 397 KCAQTQKKKAKRKNQRPKTSQRKS-RKDKQE----CQKNENET 434


>SB_478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -2

Query: 385 NAQRRLCSRPRSN*GRDSVLHHVRDGYAN*RSAPTQRERSQRANQKRKTAQRHD 224
           NA R L    +     D+   H  +      S PTQ+ER      KR T  RH+
Sbjct: 97  NALRALSDTQKVVKSTDTTRTHTTENAKTPNSPPTQQERILPKMPKRLTVHRHN 150


>SB_57101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 855

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -3

Query: 405 FINDKIKMLNGD-YVHDRGLI--RGAIVFCIMLGTGMRINEARQLSVNDLNV-LIKKGKL 238
           F+     ML+G  + HD  L+   GA + CI   T  R+N    L + D ++  ++    
Sbjct: 454 FLTTDNLMLHGQIFGHDIDLLVDTGAAISCISSSTWRRLNTTNNLQMRDFSLAALQTADG 513

Query: 237 HSDTI 223
           HS TI
Sbjct: 514 HSLTI 518


>SB_46807| Best HMM Match : DUF827 (HMM E-Value=0.28)
          Length = 558

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
 Frame = -3

Query: 285 QLSVNDLNVLIKKGK---LHSDTINLKRK-RSRNNTLN-NIKMKPLELAREIYSRNPTIL 121
           QL   D  V+  K +   L    I+LK   R  + T++ ++ +K  EL   +  R+  I+
Sbjct: 132 QLKRKDQEVIAVKRQNEYLKEQNISLKAAIREADGTMDADLVVKLTELQSTLSRRDKEIM 191

Query: 120 QISKNTSTPFKDFRR 76
           ++ +  + PF +FR+
Sbjct: 192 ELRRRATDPFVEFRK 206


>SB_2889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 252 KKGKLHSDTINLKRKRSRNNTL-NNIKMKPLE 160
           K    +  T+N +RKRSR NT+ NN   K LE
Sbjct: 17  KANDSYDATLNRQRKRSRLNTVKNNATKKDLE 48


>SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74)
          Length = 604

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
 Frame = -1

Query: 188 STTSK*NRWNWHAKF-----IHETRPFCKYLKTPRRPLKISGGSSKSRASR 51
           STT     W+W         I   +P     K PR+  K S GSSKS  SR
Sbjct: 218 STTCTQTEWSWLKDIELYEEILSRKPEWVAEKKPRKESKSSAGSSKSSISR 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,382,508
Number of Sequences: 59808
Number of extensions: 203920
Number of successful extensions: 536
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)