Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8b09
(431 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14840.1 68414.m01775 expressed protein 33 0.11
At3g53120.1 68416.m05854 expressed protein 32 0.19
At2g36680.1 68415.m04499 expressed protein 29 1.8
At1g47730.1 68414.m05306 F-box family protein contains Pfam PF00... 29 1.8
At2g01750.1 68415.m00104 expressed protein 28 2.4
At3g28700.1 68416.m03581 expressed protein contains Pfam PF02636... 28 3.1
At1g06660.1 68414.m00706 expressed protein 28 3.1
At2g36680.2 68415.m04500 expressed protein 27 5.5
At2g33350.1 68415.m04088 hypothetical protein 27 5.5
At5g13420.1 68418.m01545 transaldolase, putative similar to tran... 27 7.2
At4g20160.1 68417.m02949 expressed protein ; expression supporte... 27 7.2
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 27 7.2
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n... 27 7.2
At1g07720.1 68414.m00832 beta-ketoacyl-CoA synthase family prote... 27 7.2
At5g15020.1 68418.m01761 paired amphipathic helix repeat-contain... 26 9.6
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 26 9.6
At2g16365.2 68415.m06033 F-box family protein contains Pfam:PF00... 26 9.6
At2g16365.1 68415.m06032 F-box family protein contains Pfam:PF00... 26 9.6
At2g11620.1 68415.m01249 hypothetical protein 26 9.6
>At1g14840.1 68414.m01775 expressed protein
Length = 604
Score = 32.7 bits (71), Expect = 0.11
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = -3
Query: 180 IKMKPLELAREIYSRNPTILQISKNTSTPFKDFRRLLEESGVEMERPRSNMIRHYLSS 7
IK P R + + T+L+ +K TS F R L+ S V + PRSN ++ SS
Sbjct: 410 IKRTPSSQLRSLTASASTVLKHAKGTSRSFDGGTRSLDRSKVLINGPRSNFPLNHKSS 467
>At3g53120.1 68416.m05854 expressed protein
Length = 217
Score = 31.9 bits (69), Expect = 0.19
Identities = 19/89 (21%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = -3
Query: 279 SVNDLNVLIK-KGKLHSDTINLKRKRSRNNTLNNIKMKPLELAREIYSRNPTILQISKNT 103
SV++L L+ K ++L + + +NN + ++ + L+LAR+ + P I+++
Sbjct: 66 SVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETLQLARDNLEKEPQIMELRNQC 125
Query: 102 STPFKDFRRLLEESGVEMERPRSNMIRHY 16
+E E+ER + +++ Y
Sbjct: 126 RIIRTTELATAQEKLNELERQKEEILKFY 154
>At2g36680.1 68415.m04499 expressed protein
Length = 218
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = -3
Query: 279 SVNDLNVLIKKGKLHSDTIN-LKRKRSRNNTLNNIKMKPLELAREIYSRNPTILQISKNT 103
SV++L L+ + ++ L + +NN ++ + L LARE + P I+++
Sbjct: 66 SVDELRKLLSDKDAYQQFLHSLDQVTIQNNIREELRKETLHLARENLEKEPQIVELRNQC 125
Query: 102 STPFKDFRRLLEESGVEMERPRSNMIRHY 16
+E E+E R +++ Y
Sbjct: 126 RIIRTSELATAQEKLNELENQREEILKFY 154
>At1g47730.1 68414.m05306 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain; identical to
hypothetical protein GB:AAD46016 GI:5668790 from
(Arabidopsis thaliana)
Length = 391
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -3
Query: 228 TINLKRKRSRNNTLNNIKMKPLELAREIYSRNP 130
T N++RKRSR + ++ PL+L EI+SR P
Sbjct: 8 TENIQRKRSRGKSSSS--SLPLDLTSEIFSRLP 38
>At2g01750.1 68415.m00104 expressed protein
Length = 629
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 177 KMKPLELAREIYSRNPTILQISKNTSTPFKDFRRLLEESGVEMERPRS 34
K P R + + TIL+ +K TS F R L+ S V PRS
Sbjct: 435 KRSPSSQFRSLNASTSTILKHAKGTSRSFDGGSRSLDRSKVLTNEPRS 482
>At3g28700.1 68416.m03581 expressed protein contains Pfam PF02636:
Uncharacterized ACR, COG1565
Length = 471
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = -2
Query: 190 AQQHQNETVGIGTRNLFTKPDHF------ANI*KHLDAL*RFQAAP 71
A +H T+ I +L+T PDH + + KHL ++ +F+ P
Sbjct: 47 AVEHPGTTISIDRSSLYTPPDHSHESTPDSELVKHLKSIIKFRGGP 92
>At1g06660.1 68414.m00706 expressed protein
Length = 481
Score = 27.9 bits (59), Expect = 3.1
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = -3
Query: 222 NLKRKRSRNNTLNNIKMKPL---ELAREIYSRNPTILQISKNTSTPFKDFRRLLEESGVE 52
+L + S N++ N KP ++ + S NPT L++S TP + +E G
Sbjct: 228 DLDQSNSSNSSENGSSRKPEMGGKICFTVSSPNPTPLKLSDEMQTPGTIYPANMESGGRG 287
Query: 51 MERPRSNMIRHYLSS 7
R RS + H +S+
Sbjct: 288 RPRIRSQFV-HSVSN 301
>At2g36680.2 68415.m04500 expressed protein
Length = 168
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -3
Query: 279 SVNDLNVLIKKGKLHSDTIN-LKRKRSRNNTLNNIKMKPLELAREIYSRNPTILQISKNT 103
SV++L L+ + ++ L + +NN ++ + L LARE + P I+++
Sbjct: 66 SVDELRKLLSDKDAYQQFLHSLDQVTIQNNIREELRKETLHLARENLEKEPQIVELRNQV 125
Query: 102 STPFKDFRRLLE 67
+ + L++
Sbjct: 126 NNIIQSLSELIK 137
>At2g33350.1 68415.m04088 hypothetical protein
Length = 440
Score = 27.1 bits (57), Expect = 5.5
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -3
Query: 264 NVLIKKGKLHSDTINLKRKRSRNNTLNNIKMKPLELAREIYSRNPTILQISKNTSTPFK- 88
N+L K G HS+T + NN NN K L + N T L I ++ F+
Sbjct: 81 NILEKSGSFHSNTNTTTTTENSNNNNNN---KNTNLQDDEDDNNNTDLSIIFDSQEDFEN 137
Query: 87 DFRRLLEESGVEMERPRSNMIRHYLSS 7
D ++ S ++ P +I H L++
Sbjct: 138 DITASIDFSSSSLQYP---VIDHLLTA 161
>At5g13420.1 68418.m01545 transaldolase, putative similar to
transaldolase [Solanum tuberosum] gi|2078350|gb|AAB54016
Length = 438
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 135 NPTILQISKNTSTPFKDFRRLLEESGVEME 46
NP I Q + +TS + D R L ESG ++E
Sbjct: 114 NPAIFQKAISTSNAYNDQFRTLVESGKDIE 143
>At4g20160.1 68417.m02949 expressed protein ; expression supported
by MPSS
Length = 1188
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = -3
Query: 255 IKKGKLHSDTINLKRKRSRNNTLNNIKMKPLELAREIYSRNPTILQISKNTSTPFKDFRR 76
+ KGK D ++L+ +S+ NIK + + + R P I + +T D ++
Sbjct: 557 VVKGKKKEDFVSLESNKSKEVEDGNIKPQGVTTQADSCLRKPAIEEKVLQETTVKSDLKK 616
Query: 75 LLEESGVEMER 43
E+ E R
Sbjct: 617 PTEKESREERR 627
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 312 TGMRINEARQLSVNDLNVLIKKGKL 238
TG + +EA+ +ND+N +IK G+L
Sbjct: 178 TGAKTHEAKINIINDVNGIIKPGRL 202
>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1)
nearly identical to retinoblastoma-related protein
[Arabidopsis thaliana] GI:8777927; contains Pfam
profiles: PF01858 retinoblastoma-associated protein A
domain, PF01857 retinoblastoma-associated protein B
domain
Length = 1013
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 38 RGRSISTPDSSRSRLKSLKGVEVFLDICKM 127
R R+ S DSSR K KGV++ +CK+
Sbjct: 233 RFRNFSIQDSSRFVKKGDKGVDLVASLCKI 262
>At1g07720.1 68414.m00832 beta-ketoacyl-CoA synthase family protein
similar to GB:AAC99312 from [Arabidopsis thaliana]
(Plant J. (1999) In press)
Length = 478
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -3
Query: 351 LIRGAIVFCIMLGTGMRINEARQLSVNDLNVLIKKGKLHSDTIN 220
L RG VF I G G + N V DLNV G + + IN
Sbjct: 401 LKRGDRVFMISFGAGFKCNSCVWEVVRDLNVGEAVGNVWNHCIN 444
>At5g15020.1 68418.m01761 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1377
Score = 26.2 bits (55), Expect = 9.6
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Frame = -3
Query: 324 IMLGTGMRINEARQLSVNDLNVLIKKGKLHSDTINLKRKRSRNNTLNNIKMKP-LELARE 148
++ G + + +++++D+ KK + I+ K N + K LE+
Sbjct: 105 LIFGFNTFLPKGFEITLDDVEAPSKKTVEFEEAISFVNKIKTRFQHNELVYKSFLEILNM 164
Query: 147 IYSRNPTILQISKNTSTPFKDFRRLLEE 64
N I ++ ST F+D LLEE
Sbjct: 165 YRKDNKDITEVYNEVSTLFEDHSDLLEE 192
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 216 KRKRSRNNTLNNIKMKPLELAREIYSRN 133
KRKR R L K + LE ARE+ N
Sbjct: 640 KRKREREKNLPRKKRRKLEAAREMLEDN 667
>At2g16365.2 68415.m06033 F-box family protein contains Pfam:PF00646
F-box domain
Length = 455
Score = 26.2 bits (55), Expect = 9.6
Identities = 18/98 (18%), Positives = 42/98 (42%)
Frame = -3
Query: 351 LIRGAIVFCIMLGTGMRINEARQLSVNDLNVLIKKGKLHSDTINLKRKRSRNNTLNNIKM 172
LIR ++ + + ++ QL + KGK+ ++L + ++ +++
Sbjct: 134 LIRPVRIYATVDSVNLPKEDSHQLLKGSTVSMKLKGKIFGGYLDLFPNQDHSHNRGGVRL 193
Query: 171 KPLELAREIYSRNPTILQISKNTSTPFKDFRRLLEESG 58
+ LE +++ P + S T+T D + + SG
Sbjct: 194 QSLESSKDTQEDGPRKNESSAETNTLEMDRLQTIHLSG 231
>At2g16365.1 68415.m06032 F-box family protein contains Pfam:PF00646
F-box domain
Length = 778
Score = 26.2 bits (55), Expect = 9.6
Identities = 18/98 (18%), Positives = 42/98 (42%)
Frame = -3
Query: 351 LIRGAIVFCIMLGTGMRINEARQLSVNDLNVLIKKGKLHSDTINLKRKRSRNNTLNNIKM 172
LIR ++ + + ++ QL + KGK+ ++L + ++ +++
Sbjct: 134 LIRPVRIYATVDSVNLPKEDSHQLLKGSTVSMKLKGKIFGGYLDLFPNQDHSHNRGGVRL 193
Query: 171 KPLELAREIYSRNPTILQISKNTSTPFKDFRRLLEESG 58
+ LE +++ P + S T+T D + + SG
Sbjct: 194 QSLESSKDTQEDGPRKNESSAETNTLEMDRLQTIHLSG 231
>At2g11620.1 68415.m01249 hypothetical protein
Length = 491
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -3
Query: 243 KLHSDTINLKRKRSRNNTLNNIKMKPLELAREIYSRNPTILQISKNTS 100
KL + N+ R NN + + MKP + +++Y + QI +N S
Sbjct: 245 KLPYEVNNVLRYDGNNNGMQGVLMKPEKPPQDLYGQCQPQPQIQRNFS 292
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,799,753
Number of Sequences: 28952
Number of extensions: 133502
Number of successful extensions: 380
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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