Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b08
         (733 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    26   0.36 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   0.63 
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   4.4  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.4  

>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 11/48 (22%), Positives = 20/48 (41%)
 Frame = -1

Query: 562 PWITKIKCRGENSKREGSYPERHVESLAEAETWEAARTLRLRALSCRP 419
           PW+ + K   ++S++E   P R   +    +  E  +        CRP
Sbjct: 116 PWMKEKKTTRKSSQQENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRP 163


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +1

Query: 298 NQTQSASLSRLQGRHQQRESDPALWKRKHKAGRPKKQ 408
           N   + ++ RL    Q +  DP+ W+++ K     K+
Sbjct: 115 NNGTNKNMRRLSTTTQNKNDDPSYWEKRRKNNEAAKR 151


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 535 GENSKREGSYPERHVESLAEAETW 464
           G+ SKR+G+Y  R  +   E   W
Sbjct: 355 GDPSKRKGTYAFRTPDENGEGGAW 378


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 552 PKLNVEVKIPNGKAPIPNDMWNPSPKPKPGKP 457
           P  NV V + +    +  ++ NPS   KPGKP
Sbjct: 664 PVRNVSVDVRDNI--LLKNLQNPSTGSKPGKP 693


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,871
Number of Sequences: 336
Number of extensions: 4165
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)