Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b07
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_47143| Best HMM Match : TPR_2 (HMM E-Value=1.5e-10)                 29   4.5  
SB_22325| Best HMM Match : Nucleoplasmin (HMM E-Value=5.8)             28   7.9  
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +1

Query: 295 AKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECLQLKQKIDKK 429
           +KT  + A  + +LL  +TN++ +    N+K TE LQL +++D K
Sbjct: 827 SKTMEEKAELSEELLLSQTNLQSLEKRCNEKQTETLQLYKELDLK 871


>SB_47143| Best HMM Match : TPR_2 (HMM E-Value=1.5e-10)
          Length = 577

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 253 DLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECLQLKQKIDKKI 432
           DL H +L  G  F+ +  LD+A+  LK +  + + + V  M        +Q   +  KKI
Sbjct: 501 DLGHAYLSCGDAFQGRKMLDLAVSGLKNMYGEEHPEVVRAMTVLGIAHTMQGNWQEGKKI 560


>SB_22325| Best HMM Match : Nucleoplasmin (HMM E-Value=5.8)
          Length = 282

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 38  RVTISTRRRACSVKIARLFSGRPSRTKHNKNDYYRRHDPRATNRRINPNTSNL 196
           R + + RR   SV I   F      TKHN N+    ++    N  IN N +N+
Sbjct: 101 RASCAQRRGRASV-ILVFFCWHGICTKHNNNNNNNNNNNNNNNNNINNNNNNI 152


>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1902

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 310  DIALDNLKLLRR-KTNIKEVAVMLNKKTTECLQLKQKIDKK 429
            D+  D+LK     +    EV  ++NK TT+ LQ   +IDK+
Sbjct: 1513 DVQSDSLKAASLVQHGSSEVGRLVNKNTTDVLQKTDRIDKR 1553


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,187,009
Number of Sequences: 59808
Number of extensions: 368701
Number of successful extensions: 863
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)