Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b06
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)                 32   0.53 
SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.92 
SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)               31   0.92 
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)                   31   1.2  
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)                 29   3.7  
SB_37232| Best HMM Match : EGF (HMM E-Value=1)                         29   3.7  

>SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
          Length = 156

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 62  CMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 187
           C + R S      V   +CGHSC C+ C + VN    CP+C+
Sbjct: 28  CDQYRTSKMKLVPVVMPNCGHSC-CSTCAKRVN--RKCPECR 66


>SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 101 VTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 196
           V  L+CGH C C  C + +   + CP C+  I
Sbjct: 548 VVLLNCGHVCSCRTCAQQI---HQCPVCRGDI 576


>SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)
          Length = 317

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 47  AVDSACMRCRRSFAVYPAVTYLHCG-HSCLCTDCDETVNVDN 169
           A  + C  C+  F+    + Y   G H C+C +C+ET + +N
Sbjct: 225 ATKNKCASCQTEFSRSKDLKYHEKGCHPCVCNECNETFDHEN 266


>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
          Length = 514

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 71  CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIR 199
           C+        + +L CGH   C  C E + +   CP C++ IR
Sbjct: 473 CKICMDAEVGIVFLPCGHLSCCPGCAEGMEL---CPMCRAPIR 512


>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 54  TVHACVAEEVSQFTPPLPICIADIRVCAPIATKR*TWTIRV 176
           +VH C A  V++FT  L +C+  +  CA +   R T  +R+
Sbjct: 411 SVHTCAALVVARFTLVLRLCL-PVHTCAALVFARFTLALRL 450


>SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)
          Length = 765

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 110 LHCGHSCLCTDCDETVNVDNTCPKCKSGIR 199
           L C H+C+C  C     +++ CP C+  IR
Sbjct: 701 LPCRHACVCGSCFS--RLESKCPLCRQVIR 728


>SB_37232| Best HMM Match : EGF (HMM E-Value=1)
          Length = 79

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 116 CGHSCLCTDCDETVNVDNTCPKCKSGIRYKLK 211
           C +   C +  + VN   TCP C  G+R ++K
Sbjct: 3   CANGGTCNNGADNVNNTCTCPVCLKGVRCEMK 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,646,944
Number of Sequences: 59808
Number of extensions: 419728
Number of successful extensions: 1344
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)