Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b04
         (595 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8A9F6 Cluster: Putative uncharacterized protein; n=1; ...    38   0.18 
UniRef50_Q4YX92 Cluster: Putative uncharacterized protein; n=1; ...    34   2.2  
UniRef50_UPI00006CA425 Cluster: hypothetical protein TTHERM_0052...    34   2.9  

>UniRef50_Q8A9F6 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides thetaiotaomicron|Rep: Putative
           uncharacterized protein - Bacteroides thetaiotaomicron
          Length = 791

 Score = 37.9 bits (84), Expect = 0.18
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -2

Query: 399 FIKYSH*VPMCTLQNHIFYIKLTQSRYLYYFVQ--LKFNWIVLSIFHIFYFISQKH 238
           F++Y H  P+ +LQ+     KLT  RYLY  VQ  + F  IVLS+F +       H
Sbjct: 373 FLRYRHITPVRSLQSIYIGNKLTVVRYLYLSVQYVITFTLIVLSLFFVRQLYEMLH 428


>UniRef50_Q4YX92 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium berghei|Rep: Putative uncharacterized protein
            - Plasmodium berghei
          Length = 1329

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -2

Query: 432  YLFNKNINS*LFIKYSH*VPMCTLQNHIFYIKLTQSRYLYYFVQLKFNWIV--LSIFHIF 259
            Y F+K IN     K+ +   +C LQN+ F+I   + + L     L  N+I    S FHIF
Sbjct: 1257 YFFSKIINFENKFKFIYNPNLCYLQNNFFFISEYKQKCLNLDYILNNNYIYSQFSYFHIF 1316

Query: 258  YFISQ 244
             F+ +
Sbjct: 1317 KFLKK 1321


>UniRef50_UPI00006CA425 Cluster: hypothetical protein
           TTHERM_00527310; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00527310 - Tetrahymena
           thermophila SB210
          Length = 1015

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
 Frame = -2

Query: 465 LSIFLLK*ILQYLFN--KNINS*LFIKYSH*VPMCTLQNHIFYIKLTQSR--YLYYFVQL 298
           LS   L+  L++ FN  + +N   FI++ +    C++QN I  IKL+Q+R  Y+YY    
Sbjct: 686 LSKLFLEKQLKFNFNDPQRLNQLGFIQFFNKQADCSIQNFINSIKLSQNRIGYIYYHNLN 745

Query: 297 KFNWIVLSIFHIFYFISQKH 238
            +N  ++     F FI   +
Sbjct: 746 DYNMALILFKQGFQFIKNNN 765


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 479,153,274
Number of Sequences: 1657284
Number of extensions: 8394461
Number of successful extensions: 15425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15418
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41488046300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)