Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8b04
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41016-1|AAA82318.1|  203|Caenorhabditis elegans Glutathione s-t...    29   1.9  
AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical ...    27   7.6  
AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical ...    27   7.6  

>U41016-1|AAA82318.1|  203|Caenorhabditis elegans Glutathione
           s-transferase protein11 protein.
          Length = 203

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 312 YFVQLKFNWIVLSIFHIFYFISQK 241
           YFV  K ++  L+IFHIF+F++ K
Sbjct: 143 YFVGDKISYADLAIFHIFWFMNSK 166


>AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8b protein.
          Length = 165

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 342 YKKYDFAMYTLALNVNTL*TIKNLYFC*INIVKFILIKKLIMHVE 476
           YKKYD+    +A +      IK L  C +  +   L+K+L    E
Sbjct: 59  YKKYDYKTQVMAASFRNTEEIKGLVGCDLLTISPALLKQLAAETE 103


>AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8a protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 342 YKKYDFAMYTLALNVNTL*TIKNLYFC*INIVKFILIKKLIMHVE 476
           YKKYD+    +A +      IK L  C +  +   L+K+L    E
Sbjct: 213 YKKYDYKTQVMAASFRNTEEIKGLVGCDLLTISPALLKQLAAETE 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,673,009
Number of Sequences: 27780
Number of extensions: 220518
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)