Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8a24
(311 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47590.1 68416.m05181 esterase/lipase/thioesterase family pro... 30 0.28
At4g29990.1 68417.m04266 light repressible receptor protein kina... 29 0.66
At4g20200.1 68417.m02953 terpene synthase/cyclase family protein... 28 1.5
At4g39820.1 68417.m05641 expressed protein 27 2.0
At1g51890.1 68414.m05849 leucine-rich repeat protein kinase, put... 27 2.0
At4g08685.1 68417.m01430 pollen Ole e 1 allergen and extensin fa... 27 2.6
At2g09840.1 68415.m01018 hypothetical protein 27 2.6
At1g30170.1 68414.m03688 hypothetical protein contains Pfam prof... 26 4.6
At5g28350.2 68418.m03443 expressed protein 26 6.1
At5g28350.1 68418.m03442 expressed protein 26 6.1
At4g30870.1 68417.m04383 repair endonuclease family protein cont... 26 6.1
At1g64900.1 68414.m07357 cytochrome P450, putative similar to cy... 26 6.1
At3g17240.2 68416.m02204 dihydrolipoamide dehydrogenase 2, mitoc... 25 8.1
>At3g47590.1 68416.m05181 esterase/lipase/thioesterase family
protein low similarity to cinnamoyl ester hydrolase CinI
[Butyrivibrio fibrisolvens] GI:1622732; contains
Interpro entry IPR000379
Length = 309
Score = 30.3 bits (65), Expect = 0.28
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 46 YVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQ--LVDSRH 213
+V S Y+ T PF T + N+R +K+N+ + A PS I Q ++ +RH
Sbjct: 10 FVPQDSPYYKTSPFPTSSFFNVRFPIKNNQISCNKAKNLRMDPSKGIQEQRIVIPNRH 67
>At4g29990.1 68417.m04266 light repressible receptor protein kinase
identical to light repressible receptor protein kinase
[Arabidopsis thaliana] gi|1321686|emb|CAA66376
Length = 876
Score = 29.1 bits (62), Expect = 0.66
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 28 IIGTRVYVFDPSCYFSTPPFDTVLYDNI-RTVLKDNKTALLSASIQASLPSSEIYRQLVD 204
+I TR + + TP FD + N+ +V+ N+TA+++ I + PS I+ LVD
Sbjct: 104 LIRTRFMYGNYDGFSKTPEFDLYIGANLWESVVLINETAIMTKEIIYTPPSDHIHVCLVD 163
>At4g20200.1 68417.m02953 terpene synthase/cyclase family protein
5-epi-aristolochene synthase, Nicotiana tabacum,
PATX:G505588
Length = 604
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -3
Query: 183 LGGRERSLNRCREKSSFVVLKNRPDVVVQYGIEGRS*KVAGGIEDVDSGAY 31
L G S+ + K +F LK+RP +V I+GR G ED S Y
Sbjct: 464 LAGIFMSMGKMATKEAFEWLKSRPKLVQYLSIKGRLMNDLMGYEDDMSRGY 514
>At4g39820.1 68417.m05641 expressed protein
Length = 408
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 225 VGRNMARIYQLAVDLGGRERSLNRC--REKSSFVVLKNR 115
VGRN A +Y +A D R ++C R+ S + + N+
Sbjct: 296 VGRNKALVYVVAKDYVSAVREYDKCIERDNSDIIAVNNK 334
>At1g51890.1 68414.m05849 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 888
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +1
Query: 67 YFS-TPPF---DTVLYDNIRTVLKDNKTALLSASIQASLPSSEIY 189
YFS TPPF D ++D I DNK +LLS + S+ +S Y
Sbjct: 194 YFSPTPPFLRYDEDVHDRIWIPFLDNKNSLLSTEL--SVDTSNFY 236
>At4g08685.1 68417.m01430 pollen Ole e 1 allergen and extensin
family protein contains Pfam domain, PF01190: Pollen
proteins Ole e I family
Length = 159
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 28 IIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDS 207
++ RVY F TP + +R KD +T L+ S +A S+ Y+ LV+
Sbjct: 28 VVRGRVYCDTCLAGFETPASTYISGAVVRLECKDRRTMELTYSHEARTDSTGSYKILVNE 87
Query: 208 RH 213
H
Sbjct: 88 DH 89
>At2g09840.1 68415.m01018 hypothetical protein
Length = 163
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 1 KELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNI 111
+ELALK I+ VYV P+ +TP F Y +I
Sbjct: 20 QELALKGHEIVMVHVYVSVPTSSSATPSFALNPYSSI 56
>At1g30170.1 68414.m03688 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 366
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3
Query: 168 SPFLRDLPPVGRFSPCFFRLLWSLRKILIPYSSQFWVVSFIAL 296
+P L LPP+ C ++W++ P + WVV +L
Sbjct: 107 NPKLLTLPPLNPLFSCQTDVIWNVAMSSCPDDDEDWVVGIKSL 149
>At5g28350.2 68418.m03443 expressed protein
Length = 1087
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 61 SCYFSTPPFDTVLYDNIRTVLK--DNKTALLSASIQASLP 174
+C+ TP T+L+ +R +L+ N+ ALL A + A P
Sbjct: 707 ACFEPTPQAQTILHCLLRHLLQRDKNEEALLLAQLSAEKP 746
>At5g28350.1 68418.m03442 expressed protein
Length = 1127
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 61 SCYFSTPPFDTVLYDNIRTVLK--DNKTALLSASIQASLP 174
+C+ TP T+L+ +R +L+ N+ ALL A + A P
Sbjct: 747 ACFEPTPQAQTILHCLLRHLLQRDKNEEALLLAQLSAEKP 786
>At4g30870.1 68417.m04383 repair endonuclease family protein
contains Pfam PF02732 : ERCC4 domain; similar to repair
endonuclease (TIGR:At5g41150) [Arabidopsis thaliana]
Length = 661
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 127 DNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVY 240
D + L S+ L +E+Y DSR+ DS G +
Sbjct: 252 DKDPSTLWLSVMCHLRQAEVYNSCPDSRNSKKDSSGPF 289
>At1g64900.1 68414.m07357 cytochrome P450, putative similar to
cytochrome p450 GI:438240 from [Solanum melongena]
Length = 506
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +1
Query: 130 NKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFG 234
++ +L+ ++ A P + ++VD ++SS S+G
Sbjct: 88 HEALVLNGAVYADRPPPAVISKIVDEHNISSGSYG 122
>At3g17240.2 68416.m02204 dihydrolipoamide dehydrogenase 2,
mitochondrial / lipoamide dehydrogenase 2 (MTLPD2)
nearly identical to GB:AAF34796 [gi:6984216] from
[Arabidopsis thaliana]; alternative splice form exists
Length = 127
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 201 RFSPCFFRLLWSL 239
+FSP F RLLW+L
Sbjct: 106 KFSPIFIRLLWNL 118
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,186,525
Number of Sequences: 28952
Number of extensions: 111679
Number of successful extensions: 299
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -