Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8a23
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 32 0.42
At5g03990.1 68418.m00379 expressed protein predicted protein, Ar... 30 1.3
At5g53190.1 68418.m06612 nodulin MtN3 family protein similar to ... 29 3.9
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 29 3.9
At1g49560.1 68414.m05557 myb family transcription factor contain... 29 3.9
At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR ... 29 3.9
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 3.9
At2g45140.1 68415.m05618 vesicle-associated membrane protein, pu... 28 6.8
At5g65490.1 68418.m08236 expressed protein similar to unknown pr... 27 9.0
At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative... 27 9.0
At3g05380.1 68416.m00588 myb family transcription factor contain... 27 9.0
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel... 27 9.0
At1g42710.1 68414.m04932 hypothetical protein 27 9.0
At1g03830.1 68414.m00364 guanylate-binding family protein contai... 27 9.0
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 31.9 bits (69), Expect = 0.42
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Frame = +1
Query: 343 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGL---LKILMRLNFDNKSNALLHLQT 513
W+ LN + ++ + D G +FA GL L +L + FD NA T
Sbjct: 236 WEEKDGEFLNTLTNYRSDKRPD-PLRGGVFADDMGLGKTLTLLSLIAFDRYGNASTSTPT 294
Query: 514 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKND 627
E D DKIE K KK VT + K D
Sbjct: 295 EEPLDGEGDKIE---KKGKKRGRGKSSESVTRKKLKTD 329
>At5g03990.1 68418.m00379 expressed protein predicted protein,
Arabidopsis thaliana
Length = 302
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Frame = +1
Query: 157 DYKKYHINVQQWSH-----IVKWDSFKCNTHSFKYRYVHN 261
D+ + N W H WD CN +SF Y+ V N
Sbjct: 207 DHNNNNTNTDSWDHNNNFKAETWDQKNCNNNSFNYKKVEN 246
>At5g53190.1 68418.m06612 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 263
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +1
Query: 427 LFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSE 591
+ AT G+L++++ + NK + +R+D DK ++ L+ V ++ NS+
Sbjct: 197 MVATPLGILQLILYFKYKNKKDLAPTTMVITKRNDHDDKNKATLEFVVDVDRNSD 251
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 592 FRCLYSVFLHVLKQIQFCRANHHARLQFEGAATRCF 485
FR Y + +H +QI + R+N L+F+G+ + C+
Sbjct: 141 FRAPYQL-IHNHQQIAYSRSNSGVNLKFDGSGSSCY 175
>At1g49560.1 68414.m05557 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 333
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 502 HLQTEG-ERDDLRDKIESVLKHVKKLNTNSEK 594
H+Q EG D+++ ++ H++K N+N+EK
Sbjct: 226 HMQEEGLTNDEVKSHLQKYRLHIRKPNSNAEK 257
>At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 787
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 HNDTNAKFYNVIDFCKGLEIAHDDILDCN-WDSDQVYHLNEIIFHKQKSKRDLNSLGALF 432
H FY +++ + L + +L CN W+ VYH N++ +++ R LNS LF
Sbjct: 62 HQTQLGVFYEILEKARKL---CEKVLRCNRWNLKHVYHANKMKDLEKQISRFLNSQILLF 118
Query: 433 ATKQGLLKILMRLNFDNKSNALLHLQTE 516
+ +R+N D + L TE
Sbjct: 119 VLAE---VCHLRVNGDRIERNMDRLLTE 143
>At1g02730.1 68414.m00226 cellulose synthase family protein similar to
cellulose synthase catalytic subunit [gi:13925881] from
Nicotiana alata, cellulose synthase-4 [gi:9622880] from
Zea mays
Length = 1181
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = -2
Query: 438 GREQCAQRVEIAFGFLLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVV 259
G ++ A + + FL+V + MVN+IA+ + + + F ++K+ V F V+
Sbjct: 1068 GDDEFADLYVVKWSFLMVPPLTIMMVNMIAIAVGLARTLYSPFPQWSKLVGGVFFSFWVL 1127
Query: 258 VHV 250
H+
Sbjct: 1128 CHL 1130
>At2g45140.1 68415.m05618 vesicle-associated membrane protein,
putative / VAMP, putative similar to VAP27 GI:6688926
[Nicotiana plumbaginifolia]
Length = 239
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 481 NKSNALLHLQTEGERD-DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFEL 657
+ S L+ +Q + E DL+ K + +L+ V + K VTHE F + G+R E+ +L
Sbjct: 62 SSSEVLVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKD-VTHEMFSKEAGHRVEETKL 120
Query: 658 RL 663
R+
Sbjct: 121 RV 122
>At5g65490.1 68418.m08236 expressed protein similar to unknown
protein (dbj BAA75199.1)
Length = 643
Score = 27.5 bits (58), Expect = 9.0
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +1
Query: 343 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKS--NALLHLQTE 516
WD+D + L E FH + SL +F + G L I+ R + S +L L
Sbjct: 117 WDTDGEFLLIEAAFHLPRWLNPETSLNRVF-IRGGDLHIVPRSRLPDPSLVASLRFLIER 175
Query: 517 GERDDLRDKIESVLKH 564
G D ++S LK+
Sbjct: 176 GNESRASDSVQSALKN 191
>At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative
strong similarity to gi:4467359
Length = 1116
Score = 27.5 bits (58), Expect = 9.0
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Frame = +1
Query: 379 IFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGE--RDDLRDKIES 552
+FH+ K++ D S K G LK L + FD K N +T+ D+ +
Sbjct: 360 LFHESKNEDDKVSNAVDDEEKDGFLKKLFKEKFDEKRNGNERNETDETVYTDETSGEDNG 419
Query: 553 VLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFE 654
KKL EKF K D GN E E
Sbjct: 420 REGFFKKL--FKEKFEDKPNIGKADDGNESEDDE 451
>At3g05380.1 68416.m00588 myb family transcription factor contains
Pfam profile:PF00249 Myb-like DNA-binding domain
Length = 1055
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 520 ERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNEL-DAKL 684
ER+ L+ ESV KH +L T + + + T VGNR + E+ D K+
Sbjct: 694 EREKLKQYRESVRKHYTELRTGAREGLPTDLARPLAVGNRVIAIHPKTREIHDGKI 749
>At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to Lipopolysaccharide-responsive and beige-like anchor
protein (CDC4-like protein) (Beige-like protein)
(SP:P50851) [Homo sapiens}
Length = 1280
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Frame = +1
Query: 199 IVKWDSFKCNTHSFKYRYVHNDTNAKFYNVIDFCKGLEIAHDDILDC---NWDSDQVYHL 369
++ WD + T + R H + K + D + HDDI+ C + D D V
Sbjct: 1070 VMVWDILRMRTPEKRVRNTHAEVLRKDIVIADAPSHILCGHDDIITCLYVSTDLDIVISG 1129
Query: 370 NE---IIFHKQKSKRDLNSL 420
++ +FH + R + SL
Sbjct: 1130 SKDGTCVFHTLREGRYIRSL 1149
>At1g42710.1 68414.m04932 hypothetical protein
Length = 206
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 481 NKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFM-VTH 609
NK N L ++ GE++D +++ V + V K T E+F+ V H
Sbjct: 101 NKGNFLELVKYTGEQNDATEQMAVVFRFVDKSGTVKERFIEVVH 144
>At1g03830.1 68414.m00364 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 991
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +1
Query: 484 KSNALLHLQTEGERDDLRDK-IESVLKHVKKLNTNSEK----FMVTHETFKNDVGNRFEQ 648
+ N + L +E + L+ + +ES + +KK EK + +E+ +D+ +Q
Sbjct: 393 RGNQMDELMSENSKLKLQQQSLESTMNLLKKQLEGREKMNKEYQKRYESAIDDICKLSDQ 452
Query: 649 FELRLNELDAK 681
F+ R+N+L++K
Sbjct: 453 FKNRINDLESK 463
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,639,846
Number of Sequences: 28952
Number of extensions: 233095
Number of successful extensions: 733
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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