Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8a20
(741 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 349 1e-96
SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11) 32 0.42
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.74
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 29 3.0
SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 29 4.0
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_52533| Best HMM Match : rve (HMM E-Value=2) 29 4.0
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 29 4.0
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 29 4.0
SB_41690| Best HMM Match : DSL (HMM E-Value=0) 29 5.2
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 5.2
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.9
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 6.9
SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 6.9
SB_51875| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_45835| Best HMM Match : TLD (HMM E-Value=0.4) 28 9.1
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 349 bits (859), Expect = 1e-96
Identities = 164/184 (89%), Positives = 173/184 (94%)
Frame = +1
Query: 190 WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 369
WVPVTKLGRLV++ KI LE IYLFSLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAG
Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAG 67
Query: 370 QRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 549
QRTRFKAFVAIGD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 68 QRTRFKAFVAIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHT 127
Query: 550 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFAKA 729
VPCKVTGKCGS VRLIPAPRGTGIVSAPVPKKLLQMAG++DCYTS RG T TLGNFAKA
Sbjct: 128 VPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSTRGQTATLGNFAKA 187
Query: 730 TYAA 741
T+AA
Sbjct: 188 TFAA 191
>SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11)
Length = 733
Score = 32.3 bits (70), Expect = 0.42
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 400 IGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLP-VRRGYWGNKIGKPHTVPCKVTGKC 576
IGD+ G + V+ +K + G++ L+ P +RRG G++ KPH+ P ++ +
Sbjct: 137 IGDSGGIDTMDVR-NKATGSVAWGSVTKRPLTSTPDIRRGQTGSEFRKPHSEPRFMSARF 195
Query: 577 GS 582
GS
Sbjct: 196 GS 197
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 31.5 bits (68), Expect = 0.74
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -1
Query: 492 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLIIQG 313
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292
Query: 312 RAEEEI 295
R ++E+
Sbjct: 293 RNQDEL 298
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 31.5 bits (68), Expect = 0.74
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -1
Query: 492 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLIIQG 313
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576
Query: 312 RAEEEI 295
R ++E+
Sbjct: 577 RNQDEL 582
>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
Length = 280
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = -1
Query: 465 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 334
N G LA + N+ +V NG K + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147
>SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +1
Query: 493 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQ 672
S++ R +G K +P + C V G GS++ RL A G +S+ + + + +
Sbjct: 472 SIISRRSSSFGRKGSRPSCL-CSVAGAQGSISSRLCSAISRQGSISSRLCSAISRQGSIS 530
Query: 673 DCYTSARGSTGTLGN 717
SA G++ +
Sbjct: 531 SRLCSAISRQGSISS 545
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 319 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 432
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 319 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 432
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 319 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 432
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 319 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 432
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 95 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 319 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 432
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 319 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 432
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569
>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
Length = 2798
Score = 28.7 bits (61), Expect = 5.2
Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Frame = +3
Query: 396 CHWRQQRSYWFGCEVQQGSRHCHSRRYY-PC*VVCFTSSKRLLG*QD------RKATHRP 554
C R + F C GS+ CH Y C + C + G D RK H
Sbjct: 1111 CTPRNDSTGHFSCNETTGSKDCHDGWYGGTCSIYCLPHNGSS-GHYDCDASSGRKTCHVD 1169
Query: 555 LQGHRQVWFCNSPADSCPSWYWN 623
G FC+ P DS +Y N
Sbjct: 1170 WYGINCTVFCSKPRDSKDHYYCN 1192
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +1
Query: 499 LPVRRGYWGNKIG--KPHTVPCKVTGKCGSVTVRLIPAPRGT 618
LP GYW N G P PC V C + + P P GT
Sbjct: 3355 LPCPAGYWCNIKGLADPSISPCPVGHYCLNAIDKPTPCPNGT 3396
>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2353
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = -1
Query: 597 QPDCYRTTLAGDLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNM 418
+P C + + D++ + +W + V S +W N +N + D L N+
Sbjct: 626 RPKCKVSCMLNDISTEALWDTGAQISVLSKSWVN-----ENGLNTDLQDIETLLGRDRNL 680
Query: 417 TVVVANGNK 391
V ANG++
Sbjct: 681 NVSAANGSE 689
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 28.3 bits (60), Expect = 6.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 369 TAHTFQGICCHWRQQRSYW 425
TA + ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504
>SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 571 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 714
+CG+ + + R ++ P+P L ++ +Q C + STGT G
Sbjct: 591 RCGTHALTKTVSERVPDVLKHPLPPPLQELQELQVCDPPSTSSTGTTG 638
>SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 822
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 493 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 633
+V RG+W + + H + C V +CG + L AP +VS+
Sbjct: 303 TVFTTYRGFWNYALVRKHWLKCVVNLQCG-IAKHLSQAPSNKLLVSS 348
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 367 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 456
G++ + K F+A+G NGH+ C ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385
>SB_51875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = -2
Query: 677 QSCTPAI*RSFLGTGADTIPVPRGAGISRTVTEPHLPVTLQGTVCGFP 534
+SC PA + G G D G + TEPH QG P
Sbjct: 144 RSCGPAFGDPWFGCGRDLFIADNAGGNKASCTEPHKYARPQGATSDGP 191
>SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)
Length = 174
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 185 KSGFLSPNSAVLFAKEKSTNSRAFTCFLYQSKNSRSL 295
KSG L ++F E +S+AF C LY +KN SL
Sbjct: 56 KSGRLGGMPNIVFNSEYQWSSKAFLCTLY-NKNGYSL 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,344,552
Number of Sequences: 59808
Number of extensions: 543634
Number of successful extensions: 1488
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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