Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8a18
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0013 - 8957277-8957355,8957485-8957591,8957700-8957915,895...    31   1.1  
04_04_1208 - 31750493-31750587,31750733-31750851,31751425-317514...    31   1.1  

>11_03_0013 -
           8957277-8957355,8957485-8957591,8957700-8957915,
           8958191-8958907,8959483-8959656,8960292-8960546
          Length = 515

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 420 TKTVTREFYILDMYVYNK-NPTFISVIWYL*HKFFTNLSRDQL 295
           TK   REFY  D  V+N  N   ++  WY    FF N S DQL
Sbjct: 263 TKEFYREFY--DQGVFNMTNLIIVATSWYRPKTFFLNCSDDQL 303


>04_04_1208 -
           31750493-31750587,31750733-31750851,31751425-31751477,
           31751567-31751622,31752690-31752726
          Length = 119

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +2

Query: 398 NSRVTVFVAILLRNGLTDFDEIFCAYPVSMRIGQHLFFIPLNVRGSPPLNLFIYFLDTI 574
           + R+ V V    R+ + D D+     P  + +GQ ++ +   ++ SP   +FI+  +T+
Sbjct: 27  SDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTL 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,056,286
Number of Sequences: 37544
Number of extensions: 284375
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)