Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8a18
         (794 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          24   5.0  
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              24   9.6  

>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 24.2 bits (50), Expect(2) = 5.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 292 YLYYYYYHNEQKSVVVDQHF 233
           Y YYYYY  +     V+ HF
Sbjct: 532 YYYYYYYPRQVVRYPVNGHF 551



 Score = 23.0 bits (47), Expect(2) = 5.0
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -2

Query: 343 LVPVTQVLYELITGPVKYLYYYYYH 269
           ++  T +++ +      Y YYYYY+
Sbjct: 510 IIITTTIIFTICHHYYYYYYYYYYY 534


>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 24.2 bits (50), Expect(2) = 9.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 292 YLYYYYYHN 266
           Y YYYYYH+
Sbjct: 124 YYYYYYYHH 132



 Score = 22.2 bits (45), Expect(2) = 9.6
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -2

Query: 343 LVPVTQVLYELITGPVKYLYYYYYH 269
           +V +   +Y        Y YYYYY+
Sbjct: 89  IVKIDHTVYRQRHAYYYYYYYYYYY 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,676,864
Number of Sequences: 59808
Number of extensions: 359262
Number of successful extensions: 817
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)