Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8a18
         (794 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-14|CAD27765.1|  471|Anopheles gambiae putative acetyltr...    25   2.0  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    23   8.2  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    23   8.2  

>AJ439060-14|CAD27765.1|  471|Anopheles gambiae putative
           acetyltransferase protein.
          Length = 471

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 349 RYLVPVTQVLYELITGPVKYLYYYYYHNEQK 257
           RY+V   +   E +    +  YYYYY+NE++
Sbjct: 180 RYVVQRYESSEEELYARRQNCYYYYYYNEEE 210


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +2

Query: 509 FIPLNVRGSPPLNLFIYFLDTIFNFYFFMIQHTKIHT--ILNFH 634
           F+ +     P  +  +  L T FN   FM+  + + T  ILN+H
Sbjct: 259 FLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYH 302


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +2

Query: 509 FIPLNVRGSPPLNLFIYFLDTIFNFYFFMIQHTKIHT--ILNFH 634
           F+ +     P  +  +  L T FN   FM+  + + T  ILN+H
Sbjct: 291 FLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYH 334


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 703,016
Number of Sequences: 2352
Number of extensions: 14766
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83576403
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)