Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8a18
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81047-2|CAB02828.1|  376|Caenorhabditis elegans Hypothetical pr...    32   0.54 
AF100672-1|AAC68997.2|  334|Caenorhabditis elegans Hypothetical ...    30   1.7  
U13071-4|AAA20671.1|  510|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U29380-4|AAA68738.1|  646|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z81047-2|CAB02828.1|  376|Caenorhabditis elegans Hypothetical
           protein C41G6.3 protein.
          Length = 376

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +2

Query: 317 VKNLCYRYQITEINVGFLLYTYISNI*NSRVTVFVAILL 433
           V+  C RY   EIN+G  L + IS I   R++V++A+L+
Sbjct: 104 VEMSCLRYDYLEINIGLQLLSTISQI-TRRLSVWLAVLM 141


>AF100672-1|AAC68997.2|  334|Caenorhabditis elegans Hypothetical
          protein W05E7.2 protein.
          Length = 334

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 9  YHFIFMLTPXCMLCCYIYIIVY 74
          +HF+++ T  C+LCCYI +  +
Sbjct: 21 FHFLWISTLVCILCCYIVLFPF 42


>U13071-4|AAA20671.1|  510|Caenorhabditis elegans Hypothetical
           protein T22F7.1 protein.
          Length = 510

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 6   LYHFIFMLTPXCMLCCYIYIIVYTAVL 86
           L+  I+++   C  CCYI+  +Y A L
Sbjct: 423 LHLIIWLVAKFCASCCYIFCFIYAAEL 449


>U29380-4|AAA68738.1|  646|Caenorhabditis elegans Hypothetical
           protein ZK546.5 protein.
          Length = 646

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 495 PILIDTG*AQKISSKSVKPFRRSMATKTVTREFYILDMY 379
           PI   +G + K+ S +  PF R    +    +FY+L+ Y
Sbjct: 23  PIYSSSGPSHKVDSNAASPFSRLHPMERTYIKFYLLNFY 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,513,422
Number of Sequences: 27780
Number of extensions: 308463
Number of successful extensions: 687
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)