Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8a18
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.61 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   4.3  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   7.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   10.0 

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 509 FIPLNVRGSPPLNLFIYFLDTIFNFYFFMIQHTKIHT--ILNFHPSTINPY 655
           F+ L     P ++  I  L + FN   FM+  + + T  +LNFH  T + Y
Sbjct: 307 FLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLNFHHRTPDRY 357



 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 369 YYTHTYLIYKIL 404
           Y+ HTY+IY+ L
Sbjct: 39  YFHHTYIIYESL 50


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +2

Query: 509 FIPLNVRGSPPLNLFIYFLDTIFNFYFFMIQHTKIHT--ILNFH 634
           F+ +     P  +  +  L T FN   FM+  + + T  ILN+H
Sbjct: 276 FLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYH 319


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 734 FIILRXDQNKNKILAKYFKXFN 669
           FI+++ D N   I  KY + FN
Sbjct: 103 FIVVKNDDNFRNISEKYQEIFN 124


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 509 FIPLNVRGSPPLNLFIYFLDTIFNFYFFMIQHTKIHT--ILNFHPSTINPY 655
           F+ L     P ++  I  L + FN   FM+  + + T  +L FH  T + Y
Sbjct: 239 FLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRY 289


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 509 FIPLNVRGSPPLNLFIYFLDTIFNFYFFMIQHTKIHT--ILNFHPSTINPY 655
           F+ L     P ++  I  L + FN   FM+  + + T  +L FH  T + Y
Sbjct: 239 FLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRY 289


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 509 FIPLNVRGSPPLNLFIYFLDTIFNFYFFMIQHTKIHT--ILNFHPSTINPY 655
           F+ L     P ++  I  L + FN   FM+  + + T  +L FH  T + Y
Sbjct: 239 FLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRY 289


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 369 YYTHTYLIYKIL 404
           Y+ HTY+IY+ L
Sbjct: 39  YFHHTYIIYESL 50


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
 Frame = -3

Query: 537 GLPLTFRGMKNRC-----WPILIDTG*AQKISSKSVK 442
           GLP TFR  KN       +PI +  G    I  KS K
Sbjct: 513 GLPFTFREQKNLMIELDKFPITLQPG-KNTIEQKSTK 548


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,758
Number of Sequences: 438
Number of extensions: 4000
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)