Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8a18
         (794 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28460.1 68418.m03456 pentatricopeptide (PPR) repeat-containi...    28   6.2  
At5g28370.1 68418.m03445 pentatricopeptide (PPR) repeat-containi...    28   6.2  
At4g01740.1 68417.m00226 DC1 domain-containing protein similar t...    28   6.2  
At3g61520.1 68416.m06890 pentatricopeptide (PPR) repeat-containi...    28   6.2  

>At5g28460.1 68418.m03456 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 766

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +2

Query: 353 INVGFLLYTYI-SNI*NSRV-TVFVAILLRNGLTD 451
           +N   L+Y  + SN+ NS+V  V V +LLRNGL D
Sbjct: 168 VNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVD 202


>At5g28370.1 68418.m03445 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 727

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +2

Query: 353 INVGFLLYTYI-SNI*NSRV-TVFVAILLRNGLTD 451
           +N   L+Y  + SN+ NS+V  V V +LLRNGL D
Sbjct: 168 VNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVD 202


>At4g01740.1 68417.m00226 DC1 domain-containing protein similar to
           T15B16.6 similar to A. thaliana CHP-rich hypothetical
           proteins encoded by T10M13, GenBank accession number
           AF001308
          Length = 652

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 233 CLNYELCFSFCK*YSCNHVIINSCNKMYPTTSRRI 129
           C  ++     C  Y CNH+I  +C  + P    R+
Sbjct: 478 CYKFKYGMLVCVEYECNHLICFNCATLPPVVKHRV 512


>At3g61520.1 68416.m06890 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 766

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +2

Query: 353 INVGFLLYTYI-SNI*NSRV-TVFVAILLRNGLTD 451
           +N   L+Y  + SN+ NS+V  V V +LLRNGL D
Sbjct: 168 VNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVD 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,840,191
Number of Sequences: 28952
Number of extensions: 259190
Number of successful extensions: 405
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)